Variant report

Variant	rs10489752
Chromosome Location	chr1:186153511-186153512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:186149621..186151252-chr1:186152993..186154563,2	K562	blood:
2	chr1:186148276..186150071-chr1:186151136..186154406,3	MCF-7	breast:
3	chr1:186152958..186154907-chr1:186156624..186160486,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11576689	1.00[CEU][hapmap]
rs11803845	0.90[ASN][1000 genomes]
rs11808677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11809665	1.00[EUR][1000 genomes]
rs11811575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067376	1.00[CEU][hapmap]
rs1322376	1.00[JPT][hapmap]
rs16824945	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16825012	1.00[CEU][hapmap]
rs16825020	1.00[CEU][hapmap]
rs16825022	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16825024	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35594835	0.90[ASN][1000 genomes]
rs41317507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58758627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59091582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59379268	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658106	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672327	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695626	1.00[CEU][hapmap]
rs72707450	0.94[EUR][1000 genomes]
rs72707466	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74136042	1.00[ASN][1000 genomes]
rs7527214	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539719	1.00[CEU][hapmap]
rs7552194	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv1007237	chr1:186137724-186226502	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1009149	chr1:186147945-186206188	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186114600-186160800	Weak transcription	Fetal Kidney	kidney
2	chr1:186133600-186160800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:186136200-186157600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:186136800-186157000	Weak transcription	Aorta	Aorta
5	chr1:186145000-186158400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:186148000-186157000	Weak transcription	Left Ventricle	heart
7	chr1:186151200-186153600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:186151200-186155200	Enhancers	HMEC	breast
9	chr1:186151200-186156800	Enhancers	NHEK	skin
10	chr1:186151400-186153800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:186151600-186154800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:186152200-186153600	Enhancers	NH-A	brain
13	chr1:186152400-186153800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr1:186152400-186155000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:186152600-186153600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:186152800-186153600	Flanking Active TSS	Osteobl	bone
17	chr1:186152800-186154000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:186153000-186156800	Weak transcription	Esophagus	oesophagus
19	chr1:186153000-186156800	Weak transcription	Lung	lung
20	chr1:186153000-186160600	Weak transcription	Spleen	Spleen
21	chr1:186153200-186153600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:186153200-186153600	Active TSS	Brain Anterior Caudate	brain
23	chr1:186153200-186153600	Enhancers	Fetal Lung	lung
24	chr1:186153200-186153800	Enhancers	Adipose Nuclei	Adipose
25	chr1:186153200-186153800	Active TSS	A549	lung
26	chr1:186153200-186153800	Active TSS	NHDF-Ad	bronchial
27	chr1:186153200-186153800	Active TSS	NHLF	lung
28	chr1:186153200-186154000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:186153200-186155000	Enhancers	HSMM	muscle
30	chr1:186153200-186155600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:186153200-186155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:186153200-186156400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr1:186153200-186156400	Weak transcription	Right Atrium	heart
34	chr1:186153200-186156800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:186153400-186153800	Enhancers	Liver	Liver
36	chr1:186153400-186154200	Enhancers	HSMMtube	muscle
37	chr1:186153400-186156800	Weak transcription	Hela-S3	cervix
38	chr1:186153400-186157000	Weak transcription	Thymus	Thymus
39	chr1:186153400-186157200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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