Variant report

Variant	rs7539719
Chromosome Location	chr1:185958737-185958738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185958509..185961126-chr1:185968806..185971443,2	MCF-7	breast:
2	chr1:185957575..185959558-chr1:185961621..185963352,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10047250	1.00[CEU][hapmap]
rs10157843	1.00[CEU][hapmap]
rs10489717	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs10489718	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10489752	1.00[CEU][hapmap]
rs10911783	0.81[EUR][1000 genomes]
rs10911784	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs10911785	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10911787	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10911788	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10911789	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs10911790	0.81[EUR][1000 genomes]
rs11586768	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs11587002	0.81[EUR][1000 genomes]
rs11589455	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs11800990	1.00[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs11804668	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12057384	0.81[EUR][1000 genomes]
rs12062879	1.00[CEU][hapmap]
rs12067376	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs12068599	1.00[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs12068829	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs12088571	0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs12095309	0.88[EUR][1000 genomes]
rs1322361	1.00[CEU][hapmap]
rs1407427	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs1555494	1.00[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs16824945	1.00[CEU][hapmap]
rs16825012	1.00[CEU][hapmap]
rs16825020	1.00[CEU][hapmap]
rs16825022	1.00[CEU][hapmap]
rs16825024	1.00[CEU][hapmap]
rs28696376	0.81[EUR][1000 genomes]
rs41397650	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs4288554	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs58291464	0.81[EUR][1000 genomes]
rs6425011	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs6662653	0.85[TSI][hapmap]
rs6672327	1.00[CEU][hapmap]
rs6675465	1.00[CEU][hapmap]
rs6689359	1.00[CHB][hapmap]
rs6695626	1.00[CEU][hapmap]
rs72703022	0.81[EUR][1000 genomes]
rs72703023	0.81[EUR][1000 genomes]
rs72718866	0.81[EUR][1000 genomes]
rs72718868	0.81[EUR][1000 genomes]
rs72718870	0.81[EUR][1000 genomes]
rs7527214	1.00[CEU][hapmap]
rs7546152	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs7552194	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185934400-185974000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:185934600-185969000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:185936600-185999000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:185937000-185964000	Weak transcription	Aorta	Aorta
5	chr1:185938800-185990200	Weak transcription	Liver	Liver
6	chr1:185938800-185994600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:185939000-185986000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:185939200-186023000	Weak transcription	Adipose Nuclei	Adipose
9	chr1:185944200-185959400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:185954000-185959400	Weak transcription	Fetal Lung	lung
11	chr1:185954000-185959800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:185954000-185961000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:185954000-185965200	Weak transcription	NHDF-Ad	bronchial
14	chr1:185954400-185964800	Weak transcription	Fetal Kidney	kidney
15	chr1:185954600-185965400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:185956400-185959600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:185957800-185963200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:185958000-185963000	Weak transcription	Primary T cells from cord blood	blood
19	chr1:185958600-185958800	ZNF genes & repeats	Left Ventricle	heart
20	chr1:185958600-185958800	Enhancers	Lung	lung
21	chr1:185958600-185958800	Enhancers	Psoas Muscle	Psoas

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