Variant report

Variant	rs10157843
Chromosome Location	chr1:185928393-185928394
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185927313..185929446-chr1:185936091..185939017,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10047250	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10489717	1.00[CEU][hapmap]
rs10489718	1.00[CEU][hapmap]
rs10911783	0.93[AMR][1000 genomes]
rs10911784	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10911785	1.00[CEU][hapmap]
rs10911787	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10911788	1.00[CEU][hapmap]
rs10911789	1.00[CEU][hapmap]
rs1116146	0.91[EUR][1000 genomes]
rs11580879	0.91[EUR][1000 genomes]
rs11586768	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11586771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11589455	1.00[CEU][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11800990	1.00[CEU][hapmap]
rs11804668	1.00[CEU][hapmap]
rs12059676	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12062879	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12067376	1.00[CEU][hapmap]
rs12068599	1.00[CEU][hapmap]
rs12068829	1.00[CEU][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073492	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077084	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12088513	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094899	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322361	1.00[CEU][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1407427	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1555494	1.00[CEU][hapmap]
rs16824945	1.00[CEU][hapmap]
rs28535260	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28792457	0.84[EUR][1000 genomes]
rs34427602	0.91[AFR][1000 genomes]
rs35875123	0.91[EUR][1000 genomes]
rs41397650	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs4288554	1.00[CEU][hapmap]
rs6425011	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6662653	0.91[EUR][1000 genomes]
rs6675465	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6695626	1.00[CEU][hapmap]
rs72718862	0.91[EUR][1000 genomes]
rs72718864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718865	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718867	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718875	0.91[EUR][1000 genomes]
rs72718880	0.91[EUR][1000 genomes]
rs7527214	1.00[CEU][hapmap]
rs7539719	1.00[CEU][hapmap]
rs7546152	1.00[CEU][hapmap]
rs7552194	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185895200-185932200	Weak transcription	Aorta	Aorta
2	chr1:185922800-185931200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:185923800-185928800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:185923800-185929000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:185924200-185940800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:185925200-185931800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:185925800-185931800	Enhancers	NHDF-Ad	bronchial
8	chr1:185926800-185929600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:185926800-185929600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:185926800-185929600	Weak transcription	Fetal Lung	lung
11	chr1:185926800-185929800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:185926800-185933600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:185926800-185939000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:185927000-185929600	Weak transcription	Fetal Kidney	kidney
15	chr1:185927400-185929600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:185927600-185929400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:185927600-185938400	Weak transcription	Adipose Nuclei	Adipose
18	chr1:185928000-185933600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:185928000-185933600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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