Variant report

Variant	rs10911789
Chromosome Location	chr1:185940266-185940267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:185938849..185942940-chr1:185946271..185949311,3	MCF-7	breast:
2	chr1:185937559..185939140-chr1:185939272..185942030,2	K562	blood:
3	chr1:185939132..185941701-chr1:185942042..185944979,2	K562	blood:

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10047250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10157843	1.00[CEU][hapmap]
rs10449224	1.00[ASN][1000 genomes]
rs10465497	1.00[ASN][1000 genomes]
rs10465500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10489714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10489715	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10489716	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10489717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489718	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10911781	1.00[JPT][hapmap]
rs10911783	1.00[EUR][1000 genomes]
rs10911784	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10911785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911787	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10911788	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10911790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586768	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11587002	1.00[EUR][1000 genomes]
rs11589455	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11800990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11804668	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11807146	1.00[JPT][hapmap]
rs12057384	1.00[EUR][1000 genomes]
rs12062879	1.00[CEU][hapmap]
rs12067376	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12068599	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12068829	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12078444	1.00[JPT][hapmap]
rs12088571	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12095309	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239929	1.00[JPT][hapmap]
rs1321671	1.00[ASN][1000 genomes]
rs1322361	1.00[CEU][hapmap]
rs13374445	1.00[JPT][hapmap]
rs1407426	1.00[JPT][hapmap]
rs1407427	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1407428	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1407429	1.00[JPT][hapmap]
rs1555494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824465	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16824488	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16824497	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16824524	1.00[CHB][hapmap]
rs16824576	1.00[JPT][hapmap]
rs16824945	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16824998	1.00[CHB][hapmap]
rs17505819	1.00[JPT][hapmap]
rs1830622	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1830623	1.00[ASN][1000 genomes]
rs1853247	1.00[ASN][1000 genomes]
rs2129125	1.00[JPT][hapmap]
rs2170858	1.00[ASN][1000 genomes]
rs28696376	1.00[EUR][1000 genomes]
rs41397650	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4288554	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs55887884	1.00[ASN][1000 genomes]
rs56331179	1.00[ASN][1000 genomes]
rs57107751	1.00[ASN][1000 genomes]
rs57162167	1.00[ASN][1000 genomes]
rs57215320	1.00[ASN][1000 genomes]
rs57246058	1.00[ASN][1000 genomes]
rs57257586	1.00[ASN][1000 genomes]
rs57646829	1.00[ASN][1000 genomes]
rs57782754	1.00[ASN][1000 genomes]
rs58131117	1.00[ASN][1000 genomes]
rs58159343	1.00[ASN][1000 genomes]
rs58291464	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58433773	1.00[ASN][1000 genomes]
rs58437418	1.00[ASN][1000 genomes]
rs58610258	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59175860	1.00[ASN][1000 genomes]
rs59312002	1.00[ASN][1000 genomes]
rs59967839	1.00[ASN][1000 genomes]
rs60308365	1.00[ASN][1000 genomes]
rs60458315	1.00[ASN][1000 genomes]
rs60735946	1.00[ASN][1000 genomes]
rs61261990	1.00[ASN][1000 genomes]
rs61679640	1.00[ASN][1000 genomes]
rs61689983	1.00[ASN][1000 genomes]
rs6425001	1.00[ASN][1000 genomes]
rs6425004	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6425005	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6425011	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6657554	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6657683	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6660510	1.00[JPT][hapmap]
rs6662653	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs6667316	1.00[JPT][hapmap]
rs6671094	1.00[ASN][1000 genomes]
rs6672327	1.00[CEU][hapmap]
rs6675465	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6675691	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6676522	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6676629	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6676765	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6677183	1.00[ASN][1000 genomes]
rs6679816	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6683809	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6686816	1.00[ASN][1000 genomes]
rs6688298	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6688369	1.00[ASN][1000 genomes]
rs6689359	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6690475	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6690559	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6690714	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6695626	1.00[CEU][hapmap]
rs6696804	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6698721	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6700856	1.00[ASN][1000 genomes]
rs726777	1.00[JPT][hapmap]
rs72703022	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703023	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718868	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72718870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73054403	1.00[ASN][1000 genomes]
rs73054407	1.00[ASN][1000 genomes]
rs73058401	1.00[ASN][1000 genomes]
rs73060467	1.00[ASN][1000 genomes]
rs73060474	1.00[ASN][1000 genomes]
rs73062155	1.00[ASN][1000 genomes]
rs73062157	1.00[ASN][1000 genomes]
rs73062161	1.00[ASN][1000 genomes]
rs73062164	1.00[ASN][1000 genomes]
rs73062166	1.00[ASN][1000 genomes]
rs73062512	1.00[ASN][1000 genomes]
rs73062516	1.00[ASN][1000 genomes]
rs73070519	1.00[ASN][1000 genomes]
rs73070522	1.00[ASN][1000 genomes]
rs73070547	1.00[ASN][1000 genomes]
rs73070548	1.00[ASN][1000 genomes]
rs73070567	1.00[ASN][1000 genomes]
rs73070598	1.00[ASN][1000 genomes]
rs73072056	1.00[ASN][1000 genomes]
rs73072077	1.00[ASN][1000 genomes]
rs74135350	1.00[ASN][1000 genomes]
rs74135351	1.00[ASN][1000 genomes]
rs7517811	1.00[ASN][1000 genomes]
rs7519398	1.00[ASN][1000 genomes]
rs7521401	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7527214	1.00[CEU][hapmap]
rs7532062	1.00[ASN][1000 genomes]
rs7532431	1.00[ASN][1000 genomes]
rs7539719	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs7540698	1.00[CHB][hapmap]
rs7540727	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7540773	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7541361	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7544162	1.00[ASN][1000 genomes]
rs7544533	1.00[JPT][hapmap]
rs7544808	1.00[ASN][1000 genomes]
rs7546152	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547368	1.00[ASN][1000 genomes]
rs7547380	1.00[CHB][hapmap]
rs7552194	1.00[CEU][hapmap]
rs7555536	1.00[ASN][1000 genomes]
rs9628626	1.00[ASN][1000 genomes]
rs9628634	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185924200-185940800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:185931400-185940800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:185931400-185940800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:185931800-185941200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:185934400-185974000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:185934600-185969000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:185936600-185999000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:185936800-185942600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:185937000-185964000	Weak transcription	Aorta	Aorta
10	chr1:185938000-185940800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:185938200-185944000	Enhancers	NH-A	brain
12	chr1:185938200-185944200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:185938400-185940800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:185938400-185941000	Enhancers	Osteobl	bone
15	chr1:185938600-185946600	Weak transcription	Fetal Kidney	kidney
16	chr1:185938800-185942400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:185938800-185990200	Weak transcription	Liver	Liver
18	chr1:185938800-185994600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr1:185939000-185941800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:185939000-185944200	Enhancers	NHDF-Ad	bronchial
21	chr1:185939000-185953600	Weak transcription	Fetal Lung	lung
22	chr1:185939000-185986000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:185939200-185940400	Weak transcription	NHLF	lung
24	chr1:185939200-185940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:185939200-186023000	Weak transcription	Adipose Nuclei	Adipose
26	chr1:185939600-185940800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:185939600-185941400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:185939600-185942200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:185939800-185958600	Weak transcription	Left Ventricle	heart

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