Variant report

Variant	rs7555536
Chromosome Location	chr1:185750442-185750443
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10047250	1.00[ASN][1000 genomes]
rs10449224	1.00[ASN][1000 genomes]
rs10465497	1.00[ASN][1000 genomes]
rs10465500	1.00[ASN][1000 genomes]
rs10489713	1.00[AMR][1000 genomes]
rs10489714	1.00[ASN][1000 genomes]
rs10489715	1.00[ASN][1000 genomes]
rs10489716	1.00[ASN][1000 genomes]
rs10489717	1.00[ASN][1000 genomes]
rs10911785	1.00[ASN][1000 genomes]
rs10911789	1.00[ASN][1000 genomes]
rs10911790	1.00[ASN][1000 genomes]
rs11800990	1.00[ASN][1000 genomes]
rs12095309	1.00[ASN][1000 genomes]
rs1321671	1.00[ASN][1000 genomes]
rs1321672	1.00[AMR][1000 genomes]
rs1321673	1.00[AMR][1000 genomes]
rs1321674	1.00[AMR][1000 genomes]
rs1321675	1.00[AMR][1000 genomes]
rs1407428	1.00[ASN][1000 genomes]
rs1555494	1.00[ASN][1000 genomes]
rs16824426	1.00[AMR][1000 genomes]
rs16824428	1.00[AMR][1000 genomes]
rs16824451	1.00[AMR][1000 genomes]
rs16824455	1.00[AMR][1000 genomes]
rs16824458	1.00[AMR][1000 genomes]
rs16824465	1.00[ASN][1000 genomes]
rs16824488	1.00[ASN][1000 genomes]
rs16824497	1.00[ASN][1000 genomes]
rs1830622	1.00[ASN][1000 genomes]
rs1830623	1.00[ASN][1000 genomes]
rs1853247	1.00[ASN][1000 genomes]
rs2170858	1.00[ASN][1000 genomes]
rs55887884	1.00[ASN][1000 genomes]
rs56331179	1.00[ASN][1000 genomes]
rs57107751	1.00[ASN][1000 genomes]
rs57162167	1.00[ASN][1000 genomes]
rs57215320	1.00[ASN][1000 genomes]
rs57246058	1.00[ASN][1000 genomes]
rs57257586	1.00[ASN][1000 genomes]
rs57646829	1.00[ASN][1000 genomes]
rs57782754	1.00[ASN][1000 genomes]
rs58131117	1.00[ASN][1000 genomes]
rs58159343	1.00[ASN][1000 genomes]
rs58291464	1.00[ASN][1000 genomes]
rs58433773	1.00[ASN][1000 genomes]
rs58437418	1.00[ASN][1000 genomes]
rs58610258	1.00[ASN][1000 genomes]
rs59175860	1.00[ASN][1000 genomes]
rs59312002	1.00[ASN][1000 genomes]
rs59967839	1.00[ASN][1000 genomes]
rs60308365	1.00[ASN][1000 genomes]
rs60458315	1.00[ASN][1000 genomes]
rs60735946	1.00[ASN][1000 genomes]
rs61261990	1.00[ASN][1000 genomes]
rs61679640	1.00[ASN][1000 genomes]
rs61689983	1.00[ASN][1000 genomes]
rs6425001	1.00[ASN][1000 genomes]
rs6425004	1.00[ASN][1000 genomes]
rs6425005	1.00[ASN][1000 genomes]
rs6657554	1.00[ASN][1000 genomes]
rs6657683	1.00[ASN][1000 genomes]
rs6662653	1.00[ASN][1000 genomes]
rs6671094	1.00[ASN][1000 genomes]
rs6675465	1.00[ASN][1000 genomes]
rs6675691	1.00[ASN][1000 genomes]
rs6676522	1.00[ASN][1000 genomes]
rs6676629	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6676765	1.00[ASN][1000 genomes]
rs6677167	1.00[AMR][1000 genomes]
rs6677183	1.00[ASN][1000 genomes]
rs6679816	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6683809	1.00[ASN][1000 genomes]
rs6686816	1.00[ASN][1000 genomes]
rs6688298	1.00[ASN][1000 genomes]
rs6688369	1.00[ASN][1000 genomes]
rs6689359	1.00[ASN][1000 genomes]
rs6690475	1.00[ASN][1000 genomes]
rs6690559	1.00[ASN][1000 genomes]
rs6690714	1.00[ASN][1000 genomes]
rs6696804	1.00[ASN][1000 genomes]
rs6698721	1.00[ASN][1000 genomes]
rs6700856	1.00[ASN][1000 genomes]
rs72703022	1.00[ASN][1000 genomes]
rs72703023	1.00[ASN][1000 genomes]
rs72718868	1.00[ASN][1000 genomes]
rs72718870	1.00[ASN][1000 genomes]
rs73054403	1.00[ASN][1000 genomes]
rs73054407	1.00[ASN][1000 genomes]
rs73058401	1.00[ASN][1000 genomes]
rs73060467	1.00[ASN][1000 genomes]
rs73060474	1.00[ASN][1000 genomes]
rs73062155	1.00[ASN][1000 genomes]
rs73062157	1.00[ASN][1000 genomes]
rs73062161	1.00[ASN][1000 genomes]
rs73062164	1.00[ASN][1000 genomes]
rs73062166	1.00[ASN][1000 genomes]
rs73062512	1.00[ASN][1000 genomes]
rs73062516	1.00[ASN][1000 genomes]
rs73070519	1.00[ASN][1000 genomes]
rs73070522	1.00[ASN][1000 genomes]
rs73070547	1.00[ASN][1000 genomes]
rs73070548	1.00[ASN][1000 genomes]
rs73070567	1.00[ASN][1000 genomes]
rs73070598	1.00[ASN][1000 genomes]
rs73072056	1.00[ASN][1000 genomes]
rs73072077	1.00[ASN][1000 genomes]
rs74135350	1.00[ASN][1000 genomes]
rs74135351	1.00[ASN][1000 genomes]
rs7517811	1.00[ASN][1000 genomes]
rs7519398	1.00[ASN][1000 genomes]
rs7521401	1.00[ASN][1000 genomes]
rs7532062	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7532431	1.00[ASN][1000 genomes]
rs7532816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540727	1.00[ASN][1000 genomes]
rs7540773	1.00[ASN][1000 genomes]
rs7541361	1.00[ASN][1000 genomes]
rs7544162	1.00[ASN][1000 genomes]
rs7544808	1.00[ASN][1000 genomes]
rs7546152	1.00[ASN][1000 genomes]
rs7547368	1.00[ASN][1000 genomes]
rs959688	1.00[AMR][1000 genomes]
rs959689	1.00[AMR][1000 genomes]
rs959690	1.00[AMR][1000 genomes]
rs9628626	1.00[ASN][1000 genomes]
rs9628634	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185737800-185758800	Weak transcription	Fetal Lung	lung
2	chr1:185744000-185755000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:185747200-185755600	Weak transcription	Aorta	Aorta
4	chr1:185747400-185755200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:185747400-185756400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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