Variant report

Variant	rs7540698
Chromosome Location	chr1:186062868-186062869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:186054319..186058815-chr1:186059370..186064070,6	K562	blood:
2	chr1:186054319..186058935-chr1:186059910..186064070,10	K562	blood:
3	chr1:186061833..186064192-chr1:186068830..186070872,3	K562	blood:
4	chr1:186061662..186064294-chr1:186070874..186073060,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10047250	1.00[CHB][hapmap]
rs10465500	1.00[CHB][hapmap]
rs10489717	1.00[CHB][hapmap]
rs10911785	1.00[CHB][hapmap]
rs10911789	1.00[CHB][hapmap]
rs11800990	1.00[CHB][hapmap]
rs11811968	1.00[AMR][1000 genomes]
rs1555494	1.00[CHB][hapmap]
rs16824998	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17466086	1.00[ASN][1000 genomes]
rs2224575	0.82[YRI][hapmap]
rs55746760	1.00[ASN][1000 genomes]
rs55980493	1.00[AMR][1000 genomes]
rs56174211	1.00[ASN][1000 genomes]
rs59367979	1.00[AMR][1000 genomes]
rs61831351	1.00[ASN][1000 genomes]
rs6662653	1.00[CHB][hapmap]
rs6686681	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72720904	1.00[ASN][1000 genomes]
rs73042565	1.00[ASN][1000 genomes]
rs74134380	1.00[AMR][1000 genomes]
rs74134387	1.00[AMR][1000 genomes]
rs7546152	1.00[CHB][hapmap]
rs7547380	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7549552	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186009400-186078000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:186013600-186068400	Weak transcription	Fetal Kidney	kidney
3	chr1:186040200-186064400	Weak transcription	Lung	lung
4	chr1:186046400-186135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:186050600-186064400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:186051400-186063200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:186051600-186064400	Weak transcription	Left Ventricle	heart
8	chr1:186052200-186118200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:186057400-186083800	Weak transcription	Adipose Nuclei	Adipose
10	chr1:186057600-186077800	Weak transcription	Liver	Liver
11	chr1:186057600-186078000	Weak transcription	Aorta	Aorta
12	chr1:186062200-186064600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:186062200-186064600	Enhancers	Hela-S3	cervix
14	chr1:186062400-186064000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:186062600-186063000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:186062600-186063000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:186062600-186063200	Enhancers	NHDF-Ad	bronchial
18	chr1:186062600-186063400	Flanking Active TSS	HUVEC	blood vessel
19	chr1:186062600-186063800	Enhancers	Osteobl	bone
20	chr1:186062600-186064000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:186062600-186064000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:186062800-186064000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr1:186062800-186064000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr1:186062800-186064000	Enhancers	NH-A	brain
25	chr1:186062800-186064200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:186062800-186065400	Weak transcription	Fetal Lung	lung

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