Variant report

Variant	rs11811968
Chromosome Location	chr1:185879494-185879495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11799934	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55980493	1.00[AMR][1000 genomes]
rs59367979	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6686681	1.00[AMR][1000 genomes]
rs74133688	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133692	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134387	1.00[AMR][1000 genomes]
rs7540698	1.00[AMR][1000 genomes]
rs7547380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185873200-185880800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:185873400-185881200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:185875600-185895800	Weak transcription	NHDF-Ad	bronchial
4	chr1:185877000-185881000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:185877000-185894200	Weak transcription	Fetal Lung	lung
6	chr1:185877200-185881000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:185877800-185904400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:185878400-185879600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:185878400-185883200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:185878600-185880000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:185878600-185880600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:185878800-185880000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:185878800-185880000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:185878800-185880400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:185878800-185880600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr1:185879000-185881800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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