Variant report

Variant	rs74133688
Chromosome Location	chr1:185815064-185815065
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11799934	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11811968	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55980493	1.00[AMR][1000 genomes]
rs59367979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134380	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134387	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185803200-185850000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:185805600-185818200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:185813400-185815400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:185813400-185815800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:185813400-185817400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:185813400-185818000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:185813400-185819400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:185813400-185821600	Weak transcription	Aorta	Aorta
9	chr1:185813400-185839000	Weak transcription	Fetal Lung	lung
10	chr1:185813600-185815600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:185813600-185817400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:185813600-185817400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:185813600-185817600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:185813600-185817600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:185813800-185817400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr1:185813800-185817400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:185813800-185817600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:185813800-185817600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr1:185813800-185818000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:185813800-185819400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links