Variant report

Variant	rs28696376
Chromosome Location	chr1:185919331-185919332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10489717	1.00[EUR][1000 genomes]
rs10489718	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10911783	1.00[EUR][1000 genomes]
rs10911785	1.00[EUR][1000 genomes]
rs10911787	1.00[EUR][1000 genomes]
rs10911788	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10911789	1.00[EUR][1000 genomes]
rs10911790	1.00[EUR][1000 genomes]
rs11587002	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11800990	1.00[EUR][1000 genomes]
rs11804668	1.00[EUR][1000 genomes]
rs12057384	1.00[EUR][1000 genomes]
rs12068599	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12088571	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095309	0.94[EUR][1000 genomes]
rs1555494	1.00[EUR][1000 genomes]
rs28792457	0.94[AMR][1000 genomes]
rs4288554	1.00[EUR][1000 genomes]
rs58291464	1.00[EUR][1000 genomes]
rs58610258	0.94[EUR][1000 genomes]
rs72703022	1.00[EUR][1000 genomes]
rs72703023	1.00[EUR][1000 genomes]
rs72718866	1.00[EUR][1000 genomes]
rs72718868	1.00[EUR][1000 genomes]
rs72718870	1.00[EUR][1000 genomes]
rs7539719	0.81[EUR][1000 genomes]
rs7546152	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185895200-185932200	Weak transcription	Aorta	Aorta
2	chr1:185908600-185925200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:185913200-185921800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:185917400-185921600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:185917400-185922200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:185917400-185923400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:185919000-185920600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:185919000-185921600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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