Variant report

Variant	rs6667316
Chromosome Location	chr1:185854271-185854272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10047250	1.00[JPT][hapmap]
rs10465500	1.00[JPT][hapmap]
rs10489714	1.00[JPT][hapmap]
rs10489715	1.00[JPT][hapmap]
rs10489716	1.00[JPT][hapmap]
rs10489717	1.00[JPT][hapmap]
rs10911781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10911785	1.00[JPT][hapmap]
rs10911789	1.00[JPT][hapmap]
rs11581777	0.90[ASN][1000 genomes]
rs11800990	1.00[JPT][hapmap]
rs11807146	1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12078444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12239929	1.00[JPT][hapmap]
rs1321669	1.00[CHB][hapmap]
rs1321670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1321671	1.00[JPT][hapmap]
rs13374445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1407426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1407428	1.00[JPT][hapmap]
rs1407429	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1555494	1.00[JPT][hapmap]
rs16824465	1.00[JPT][hapmap]
rs16824488	1.00[JPT][hapmap]
rs16824516	1.00[CHB][hapmap]
rs16824576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17461534	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs17505819	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1830622	1.00[JPT][hapmap]
rs2057381	0.90[ASN][1000 genomes]
rs2057382	0.90[ASN][1000 genomes]
rs2057383	0.90[ASN][1000 genomes]
rs2057384	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2057385	0.90[ASN][1000 genomes]
rs2129125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2220128	1.00[CHB][hapmap]
rs4651287	1.00[CHB][hapmap]
rs6425004	1.00[JPT][hapmap]
rs6425005	1.00[JPT][hapmap]
rs6657554	1.00[JPT][hapmap]
rs6657683	1.00[JPT][hapmap]
rs6660510	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6662653	1.00[JPT][hapmap]
rs6675465	1.00[JPT][hapmap]
rs6676522	1.00[JPT][hapmap]
rs6676629	1.00[JPT][hapmap]
rs6683809	1.00[JPT][hapmap]
rs6688298	1.00[JPT][hapmap]
rs6690475	1.00[JPT][hapmap]
rs6690559	1.00[JPT][hapmap]
rs6690714	1.00[JPT][hapmap]
rs6696804	1.00[JPT][hapmap]
rs6698721	1.00[JPT][hapmap]
rs726777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7521401	1.00[JPT][hapmap]
rs7540773	1.00[JPT][hapmap]
rs7541361	1.00[JPT][hapmap]
rs7544533	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7546152	1.00[JPT][hapmap]
rs9425349	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185850400-185863400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:185851000-185855800	Weak transcription	Liver	Liver
3	chr1:185853800-185854800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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