Variant report

Variant	rs16824516
Chromosome Location	chr1:185773647-185773648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185773170..185775878-chr1:185781789..185784081,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10911781	1.00[CHB][hapmap]
rs1124757	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11581777	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs11583867	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11807146	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12057982	0.91[EUR][1000 genomes]
rs12063964	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078015	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12079064	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12083564	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12085167	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12087032	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12098116	0.84[EUR][1000 genomes]
rs1321668	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1321669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1321670	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322359	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1322362	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1322364	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13374445	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13376668	0.82[EUR][1000 genomes]
rs1407429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407430	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1407431	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1552281	0.89[ASN][1000 genomes]
rs16824564	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16824576	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17446906	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17447869	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17448202	0.90[EUR][1000 genomes]
rs17448216	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs17448230	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17505819	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17507044	0.82[EUR][1000 genomes]
rs17507170	0.90[EUR][1000 genomes]
rs1951517	0.91[CEU][hapmap]
rs2057381	0.90[EUR][1000 genomes]
rs2057382	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2057383	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2057384	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2057385	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs2129125	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2170859	0.95[CEU][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2220128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35314812	0.84[EUR][1000 genomes]
rs35425624	0.87[CEU][hapmap];0.89[ASN][1000 genomes]
rs41357745	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs41458549	0.89[EUR][1000 genomes]
rs4515745	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4593772	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4596837	0.89[ASN][1000 genomes]
rs4651287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4651288	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs57398679	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57686227	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61829860	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61829884	0.81[EUR][1000 genomes]
rs61831528	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61831532	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6660510	1.00[CEU][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6667316	1.00[CHB][hapmap]
rs6692479	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7414598	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7544533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9628625	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs994970	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185764800-185774800	Weak transcription	Aorta	Aorta
2	chr1:185772800-185774200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:185773400-185773800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:185773400-185774000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:185773400-185774000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:185773400-185774000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:185773400-185774000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:185773400-185778000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:185773600-185774000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:185773600-185774200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:185773600-185774600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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