Variant report

Variant	rs1322362
Chromosome Location	chr1:185784985-185784986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1124757	0.92[EUR][1000 genomes]
rs11581777	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11583867	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11807146	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs12057982	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12063964	0.94[EUR][1000 genomes]
rs12078015	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12079064	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12083564	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12085167	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12087032	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12098116	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321668	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1321669	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1321670	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1322359	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1322364	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13374445	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs13376668	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1407429	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1407430	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1407431	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16824516	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs16824564	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16824576	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs17446906	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17447869	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17448202	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17448216	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17448230	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17505819	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17507044	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17507170	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1951517	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2057381	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2057382	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2057383	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2057384	0.90[EUR][1000 genomes]
rs2057385	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2129125	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2170859	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2220128	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs35314812	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35425624	0.87[CEU][hapmap];0.83[AMR][1000 genomes]
rs41357745	0.87[CEU][hapmap]
rs41458549	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4515745	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4593772	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4596837	0.81[AMR][1000 genomes]
rs4651287	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4651288	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57398679	0.83[EUR][1000 genomes]
rs57686227	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61829860	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61829884	0.87[EUR][1000 genomes]
rs61831528	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61831532	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6660510	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6692479	0.94[EUR][1000 genomes]
rs7414598	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7544533	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9628625	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv3505065	chr1:185782529-185786377	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3505059	chr1:185782923-185785823	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2563566	chr1:185783040-185786062	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3505058	chr1:185783079-185786327	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3320936	chr1:185783378-185785589	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2347927	chr1:185783525-185785498	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv13927	chr1:185783571-185785361	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3320935	chr1:185783576-185785401	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3505056	chr1:185783608-185785406	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3505060	chr1:185783621-185785379	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3505061	chr1:185783628-185785334	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3320938	chr1:185783632-185785367	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3320937	chr1:185783655-185785320	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3505055	chr1:185783656-185785349	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3505057	chr1:185783658-185785345	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3320934	chr1:185783699-185785302	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3505064	chr1:185783709-185785302	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3320939	chr1:185783713-185785300	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3505066	chr1:185783713-185785300	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185780400-185785000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:185781000-185785200	Weak transcription	NHDF-Ad	bronchial
3	chr1:185782800-185787800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:185783600-185785400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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