Variant report

Variant	rs41357745
Chromosome Location	chr1:185706947-185706948
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10911781	1.00[CHD][hapmap]
rs11581777	0.82[CEU][hapmap]
rs11583867	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11807146	0.82[CEU][hapmap];0.85[CHD][hapmap]
rs12078444	1.00[CHD][hapmap]
rs12079064	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs12087032	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1321669	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs1321670	0.82[CEU][hapmap]
rs1322359	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1322362	0.87[CEU][hapmap]
rs13374445	0.82[CEU][hapmap]
rs1407429	0.94[ASW][hapmap];0.87[CEU][hapmap];1.00[CHD][hapmap];0.95[LWK][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap]
rs1407430	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1407431	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap]
rs16824516	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs16824564	0.82[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs16824576	0.82[CEU][hapmap];1.00[CHD][hapmap];0.93[TSI][hapmap]
rs17445778	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17446906	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs17447869	0.87[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs17448216	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap]
rs17448230	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs17461534	0.83[CHD][hapmap]
rs17505819	0.87[CEU][hapmap];1.00[CHD][hapmap];0.90[TSI][hapmap]
rs1951517	1.00[CHB][hapmap]
rs2057382	0.82[CEU][hapmap];1.00[CHD][hapmap]
rs2057383	0.82[CEU][hapmap]
rs2057385	0.82[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs2129125	0.87[CEU][hapmap]
rs2170859	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2220128	0.87[CEU][hapmap];1.00[CHD][hapmap]
rs35425624	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap]
rs41458549	1.00[CHD][hapmap];0.84[TSI][hapmap]
rs4651287	0.94[ASW][hapmap];0.87[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap]
rs4651288	0.87[CEU][hapmap];0.87[TSI][hapmap]
rs6656530	1.00[CHB][hapmap]
rs6660510	0.87[CEU][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.93[TSI][hapmap]
rs7544533	0.83[ASW][hapmap];0.87[CEU][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap]
rs900775	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs9628625	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs994970	1.00[CHB][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv946541	chr1:185705563-185707014	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv2753636	chr1:185706947-185734487	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185704000-185714000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:185705200-185707200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:185705200-185717000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:185705400-185707000	Weak transcription	Aorta	Aorta
5	chr1:185705400-185710800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:185705800-185710200	Weak transcription	NHDF-Ad	bronchial
7	chr1:185706200-185707200	Enhancers	Psoas Muscle	Psoas
8	chr1:185706600-185707400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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