Variant report

Variant	rs17507170
Chromosome Location	chr1:185821202-185821203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:185816758..185818830-chr1:185820154..185822881,2	MCF-7	breast:
2	chr1:185819007..185822364-chr1:185824027..185827507,3	K562	blood:
3	chr1:185801576..185804195-chr1:185819606..185821997,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1124757	0.87[EUR][1000 genomes]
rs11581777	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11583867	0.80[EUR][1000 genomes]
rs11807146	0.86[EUR][1000 genomes]
rs12057982	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063964	0.89[EUR][1000 genomes]
rs12078015	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12079064	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12083564	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12085167	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12087032	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12098116	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1321668	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1321669	0.85[EUR][1000 genomes]
rs1321670	0.80[EUR][1000 genomes]
rs1322359	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1322362	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1322364	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13374445	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13376668	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407429	0.89[EUR][1000 genomes]
rs1407430	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407431	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16824516	0.90[EUR][1000 genomes]
rs16824564	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824576	0.95[EUR][1000 genomes]
rs17446906	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17447869	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17448202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17448216	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17448230	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17505819	0.89[EUR][1000 genomes]
rs17507044	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951517	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2057381	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2057382	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2057383	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2057384	0.94[EUR][1000 genomes]
rs2057385	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2129125	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2170859	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35314812	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41458549	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4515745	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4593772	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4651288	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57686227	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61829860	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61829884	0.82[EUR][1000 genomes]
rs61831528	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61831532	0.84[AMR][1000 genomes]
rs6660510	0.93[EUR][1000 genomes]
rs6692479	0.89[EUR][1000 genomes]
rs7414598	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7544533	0.80[EUR][1000 genomes]
rs9628625	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv946547	chr1:185818492-185821818	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185803200-185850000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:185813400-185821600	Weak transcription	Aorta	Aorta
3	chr1:185813400-185839000	Weak transcription	Fetal Lung	lung
4	chr1:185816800-185823000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:185818000-185821400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:185819200-185824400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:185819600-185823400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:185819800-185821600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:185819800-185822000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:185819800-185822600	Weak transcription	NHLF	lung
11	chr1:185819800-185826600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:185819800-185826600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:185819800-185829600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:185820000-185822000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:185820000-185822400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:185820000-185822400	Weak transcription	Osteobl	bone
17	chr1:185820000-185822600	Weak transcription	HMEC	breast
18	chr1:185820000-185822600	Weak transcription	NH-A	brain
19	chr1:185820000-185823000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:185820200-185822200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:185820200-185822400	Weak transcription	NHDF-Ad	bronchial
22	chr1:185820200-185822600	Weak transcription	NHEK	skin
23	chr1:185820400-185830200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:185820400-185830200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:185820600-185831000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:185821000-185822200	Enhancers	Fetal Intestine Small	intestine
27	chr1:185821000-185822400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:185821000-185824000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr1:185821000-185826600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr1:185821200-185824200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links