Variant report

Variant	rs61829884
Chromosome Location	chr1:185787936-185787937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11581777	0.81[EUR][1000 genomes]
rs11583867	0.88[EUR][1000 genomes]
rs11807146	0.86[EUR][1000 genomes]
rs12057982	0.85[EUR][1000 genomes]
rs12063964	0.81[EUR][1000 genomes]
rs12078015	0.85[EUR][1000 genomes]
rs12079064	0.85[EUR][1000 genomes]
rs12083564	0.88[EUR][1000 genomes]
rs12085167	0.88[EUR][1000 genomes]
rs12087032	0.93[EUR][1000 genomes]
rs1321670	0.89[EUR][1000 genomes]
rs1322359	0.93[EUR][1000 genomes]
rs1322362	0.87[EUR][1000 genomes]
rs1322364	0.93[EUR][1000 genomes]
rs13374445	0.87[EUR][1000 genomes]
rs13376668	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1407429	0.81[EUR][1000 genomes]
rs1407430	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1407431	0.87[EUR][1000 genomes]
rs16824516	0.81[EUR][1000 genomes]
rs16824564	0.81[EUR][1000 genomes]
rs17446906	0.93[EUR][1000 genomes]
rs17447869	0.84[EUR][1000 genomes]
rs17448202	0.82[EUR][1000 genomes]
rs17448216	0.81[EUR][1000 genomes]
rs17505819	0.81[EUR][1000 genomes]
rs17507044	0.91[EUR][1000 genomes]
rs17507170	0.82[EUR][1000 genomes]
rs1951517	0.87[EUR][1000 genomes]
rs2057381	0.82[EUR][1000 genomes]
rs2057382	0.90[EUR][1000 genomes]
rs2057383	0.80[EUR][1000 genomes]
rs2057385	0.82[EUR][1000 genomes]
rs2129125	0.89[EUR][1000 genomes]
rs2170859	0.83[EUR][1000 genomes]
rs2220128	0.88[EUR][1000 genomes]
rs35314812	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35425624	0.82[EUR][1000 genomes]
rs41458549	0.81[EUR][1000 genomes]
rs4515745	0.93[EUR][1000 genomes]
rs4593772	0.92[EUR][1000 genomes]
rs4596837	0.82[EUR][1000 genomes]
rs4651287	0.85[EUR][1000 genomes]
rs4651288	0.86[EUR][1000 genomes]
rs57398679	0.85[EUR][1000 genomes]
rs61829860	0.85[EUR][1000 genomes]
rs61831528	0.88[EUR][1000 genomes]
rs61831532	0.87[EUR][1000 genomes]
rs6660510	0.83[EUR][1000 genomes]
rs6692479	0.81[EUR][1000 genomes]
rs7414598	0.93[EUR][1000 genomes]
rs7544533	0.89[EUR][1000 genomes]
rs9628625	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185787200-185792400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:185787800-185791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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