Variant report

Variant	rs9425349
Chromosome Location	chr1:185899454-185899455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10911781	0.83[CEU][hapmap]
rs11586893	0.94[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs12078444	0.83[CEU][hapmap]
rs1407426	0.83[CEU][hapmap]
rs17461534	1.00[ASW][hapmap];0.89[TSI][hapmap]
rs6667316	0.82[CEU][hapmap]
rs726777	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185877800-185904400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:185883000-185907800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:185883200-185907400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:185883600-185906600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:185892400-185909800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:185895000-185905800	Weak transcription	Fetal Lung	lung
7	chr1:185895200-185932200	Weak transcription	Aorta	Aorta
8	chr1:185896000-185903800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:185896800-185907400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:185898600-185899600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:185898600-185899600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:185898600-185899600	Enhancers	NHDF-Ad	bronchial
13	chr1:185898600-185899800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:185899200-185899600	Enhancers	Right Atrium	heart
15	chr1:185899200-185903800	Weak transcription	NH-A	brain
16	chr1:185899400-185899600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:185899400-185899800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:185899400-185903400	Weak transcription	Hela-S3	cervix
19	chr1:185899400-185903400	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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