Variant report

Variant	rs6425011
Chromosome Location	chr1:185892391-185892392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10047250	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10157843	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10489717	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10489718	1.00[CEU][hapmap]
rs10911784	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10911785	1.00[CEU][hapmap]
rs10911787	1.00[CEU][hapmap]
rs10911788	1.00[CEU][hapmap]
rs10911789	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1116146	0.91[EUR][1000 genomes]
rs11580879	0.91[EUR][1000 genomes]
rs11586768	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11586771	1.00[EUR][1000 genomes]
rs11589455	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11800990	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11804668	1.00[CEU][hapmap]
rs12057384	0.82[AMR][1000 genomes]
rs12059676	1.00[EUR][1000 genomes]
rs12061058	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs12062879	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12066427	0.90[ASW][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap]
rs12067376	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12068599	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12068829	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12073492	1.00[EUR][1000 genomes]
rs12077084	0.91[EUR][1000 genomes]
rs12088513	1.00[EUR][1000 genomes]
rs12088571	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12094899	1.00[EUR][1000 genomes]
rs1322361	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1407427	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1555494	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs28535260	0.91[EUR][1000 genomes]
rs28792457	0.84[EUR][1000 genomes]
rs35875123	0.91[EUR][1000 genomes]
rs41397650	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs41533044	0.95[LWK][hapmap];0.94[AFR][1000 genomes]
rs4288554	1.00[CEU][hapmap]
rs6662653	1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6675465	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs72718862	0.91[EUR][1000 genomes]
rs72718864	1.00[EUR][1000 genomes]
rs72718865	1.00[EUR][1000 genomes]
rs72718867	1.00[EUR][1000 genomes]
rs72718875	0.91[EUR][1000 genomes]
rs72718880	0.91[EUR][1000 genomes]
rs74134212	0.94[AFR][1000 genomes]
rs7539719	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs7546152	1.00[CEU][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185875600-185895800	Weak transcription	NHDF-Ad	bronchial
2	chr1:185877000-185894200	Weak transcription	Fetal Lung	lung
3	chr1:185877800-185904400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:185881600-185898800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:185882000-185894800	Weak transcription	Aorta	Aorta
6	chr1:185883000-185907800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:185883200-185907400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:185883600-185906600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:185890600-185896400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:185890800-185898000	Weak transcription	Left Ventricle	heart
11	chr1:185891200-185895200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:185891400-185898600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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