Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10047250	1.00[EUR][1000 genomes]
rs10157843	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10911783	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10911784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10911787	0.93[AMR][1000 genomes]
rs1116146	0.91[EUR][1000 genomes]
rs11580879	0.91[EUR][1000 genomes]
rs11586768	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11586771	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11589455	0.91[EUR][1000 genomes]
rs12059676	1.00[EUR][1000 genomes]
rs12062879	1.00[EUR][1000 genomes]
rs12068829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12077084	0.91[EUR][1000 genomes]
rs12088513	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094899	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1407427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28535260	0.91[EUR][1000 genomes]
rs28792457	0.84[EUR][1000 genomes]
rs35875123	0.91[EUR][1000 genomes]
rs6425011	1.00[EUR][1000 genomes]
rs6662653	0.91[EUR][1000 genomes]
rs6675465	0.91[EUR][1000 genomes]
rs72718862	0.91[EUR][1000 genomes]
rs72718864	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718865	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718867	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718875	0.91[EUR][1000 genomes]
rs72718880	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185895200-185932200	Weak transcription	Aorta	Aorta
2	chr1:185903200-185913000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:185908400-185912000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:185908400-185912400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:185908600-185925200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:185908800-185912400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:185908800-185912600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:185908800-185912800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:185908800-185913200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:185909800-185912400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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