Variant report

Variant	rs72718862
Chromosome Location	chr1:185925784-185925785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10047250	0.91[EUR][1000 genomes]
rs10157843	0.91[EUR][1000 genomes]
rs10911784	0.91[EUR][1000 genomes]
rs1116146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11576597	1.00[AMR][1000 genomes]
rs11580879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11581389	1.00[AMR][1000 genomes]
rs11586768	0.91[EUR][1000 genomes]
rs11586771	0.91[EUR][1000 genomes]
rs11589455	1.00[EUR][1000 genomes]
rs12059676	0.91[EUR][1000 genomes]
rs12062879	0.91[EUR][1000 genomes]
rs12068829	0.91[EUR][1000 genomes]
rs12073492	0.91[EUR][1000 genomes]
rs12077084	1.00[EUR][1000 genomes]
rs12088513	0.91[EUR][1000 genomes]
rs12094899	0.91[EUR][1000 genomes]
rs1322361	0.91[EUR][1000 genomes]
rs1407427	0.91[EUR][1000 genomes]
rs28535260	1.00[EUR][1000 genomes]
rs35875123	1.00[EUR][1000 genomes]
rs41317473	1.00[AMR][1000 genomes]
rs6425011	0.91[EUR][1000 genomes]
rs6662653	1.00[EUR][1000 genomes]
rs6675465	1.00[EUR][1000 genomes]
rs72718864	0.91[EUR][1000 genomes]
rs72718865	0.91[EUR][1000 genomes]
rs72718867	0.91[EUR][1000 genomes]
rs72718875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718885	1.00[AMR][1000 genomes]
rs72718888	1.00[AMR][1000 genomes]
rs72718900	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185895200-185932200	Weak transcription	Aorta	Aorta
2	chr1:185922800-185931200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:185923800-185926200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:185923800-185928800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:185923800-185929000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:185924200-185940800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:185924400-185926200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:185924400-185927600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:185925200-185931800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:185925600-185926200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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