Variant report

Variant	rs10490023
Chromosome Location	chr2:210684971-210684972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10170320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[ASN][1000 genomes]
rs13412505	0.99[ASN][1000 genomes]
rs13420529	1.00[ASN][1000 genomes]
rs13432185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432245	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843726	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2191911	1.00[EUR][1000 genomes]
rs2286852	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[ASN][1000 genomes]
rs2286854	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2300155	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs58461898	0.96[ASN][1000 genomes]
rs6435543	0.98[ASN][1000 genomes]
rs6713928	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6727260	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6727370	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs6735695	0.94[ASN][1000 genomes]
rs6742553	1.00[ASN][1000 genomes]
rs7581661	1.00[ASN][1000 genomes]
rs9288412	1.00[ASN][1000 genomes]
rs9288413	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210674400-210685000	Weak transcription	Fetal Brain Female	brain
3	chr2:210674800-210685000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210678600-210688400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:210680000-210706800	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:210681800-210686400	Strong transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:210682000-210686400	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:210682800-210685000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:210683000-210685000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:210683000-210696000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:210683200-210685000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210683200-210685000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:210683200-210686600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:210683600-210704000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr2:210683800-210704200	Weak transcription	Brain Germinal Matrix	brain
17	chr2:210684000-210685000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:210684000-210685000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:210684000-210685400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr2:210684200-210685000	Weak transcription	Brain Anterior Caudate	brain
21	chr2:210684400-210685000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:210684400-210686800	Weak transcription	Fetal Brain Male	brain

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