Variant report

Variant	rs6713928
Chromosome Location	chr2:210682244-210682245
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10170320	0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10490023	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13412505	0.98[ASN][1000 genomes]
rs13420529	0.99[ASN][1000 genomes]
rs13432185	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13432245	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16843726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191911	1.00[EUR][1000 genomes]
rs2286852	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2286854	1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2300155	1.00[EUR][1000 genomes]
rs58461898	0.95[ASN][1000 genomes]
rs6435543	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6727260	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6727370	0.90[CHB][hapmap];0.92[JPT][hapmap];0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6735695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6742553	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7581661	0.99[ASN][1000 genomes]
rs9288412	0.99[ASN][1000 genomes]
rs9288413	1.00[JPT][hapmap];0.89[LWK][hapmap];0.87[MKK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9973787	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210671400-210682400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:210674400-210685000	Weak transcription	Fetal Brain Female	brain
4	chr2:210674800-210685000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:210676000-210682800	Weak transcription	Brain Germinal Matrix	brain
6	chr2:210678600-210682400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:210678600-210682800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:210678600-210688400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:210680000-210706800	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:210681000-210682400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:210681000-210684200	Strong transcription	Brain Anterior Caudate	brain
12	chr2:210681400-210684000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:210681400-210684400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr2:210681600-210682400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:210681600-210683000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:210681800-210682400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr2:210681800-210684000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr2:210681800-210684000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr2:210681800-210684000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr2:210681800-210686400	Strong transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:210682000-210683200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr2:210682000-210683600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr2:210682000-210686400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr2:210682200-210682600	Enhancers	H9 Cell Line	embryonic stem cell
26	chr2:210682200-210683600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr2:210682200-210684000	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links