Variant report

Variant	rs10490245
Chromosome Location	chr2:58675998-58675999
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs41423548	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57174143	0.88[ASN][1000 genomes]
rs57335427	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60975403	0.84[ASN][1000 genomes]
rs62140778	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62140783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62140821	0.84[ASN][1000 genomes]
rs72813949	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755713	chr2:58653580-58782707	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1012213	chr2:58671881-58893730	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv535736	chr2:58671881-58893730	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58662000-58676800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:58672000-58676800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:58672000-58676800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:58672200-58676600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:58672200-58677000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:58674800-58677200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:58674800-58677400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:58674800-58677600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:58674800-58677600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:58674800-58677800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:58674800-58677800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:58674800-58678000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:58675000-58676400	Enhancers	Liver	Liver
14	chr2:58675200-58676600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:58675200-58676800	Weak transcription	Brain Angular Gyrus	brain
16	chr2:58675200-58692000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:58675600-58676000	Weak transcription	Brain Hippocampus Middle	brain
18	chr2:58675600-58676600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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