Variant report

Variant	rs41423548
Chromosome Location	chr2:58653580-58653581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10490245	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57174143	0.89[ASN][1000 genomes]
rs57335427	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60975403	0.86[ASN][1000 genomes]
rs62140778	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62140783	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62140784	0.82[EUR][1000 genomes]
rs62140821	0.85[ASN][1000 genomes]
rs72813949	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755713	chr2:58653580-58782707	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58652000-58654200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:58652000-58654600	Enhancers	Brain Cingulate Gyrus	brain
3	chr2:58652200-58653600	Enhancers	Brain Hippocampus Middle	brain
4	chr2:58652200-58654000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:58652400-58654600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:58652600-58654000	Weak transcription	Fetal Heart	heart
7	chr2:58652800-58654200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:58653000-58653600	Enhancers	Brain Anterior Caudate	brain
9	chr2:58653000-58654000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:58653000-58654200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:58653200-58654200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:58653200-58654600	Weak transcription	Brain Angular Gyrus	brain
13	chr2:58653400-58653800	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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