Variant report

Variant	rs62140784
Chromosome Location	chr2:58673464-58673465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs41423548	0.82[EUR][1000 genomes]
rs57335427	0.82[EUR][1000 genomes]
rs62140778	0.82[EUR][1000 genomes]
rs62140783	0.82[EUR][1000 genomes]
rs62140822	1.00[AFR][1000 genomes]
rs62140829	1.00[AFR][1000 genomes]
rs62141883	1.00[AFR][1000 genomes]
rs62141884	1.00[AFR][1000 genomes]
rs72812353	1.00[AFR][1000 genomes]
rs72812377	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755713	chr2:58653580-58782707	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1012213	chr2:58671881-58893730	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv535736	chr2:58671881-58893730	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58662000-58676800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:58671000-58674800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:58671800-58674800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:58672000-58674800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:58672000-58674800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:58672000-58676800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:58672000-58676800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:58672200-58674800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:58672200-58674800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:58672200-58676600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:58672200-58677000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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