Variant report

Variant	rs62140829
Chromosome Location	chr2:58745046-58745047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57174143	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60975403	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61140557	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62140784	1.00[AFR][1000 genomes]
rs62140821	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62140822	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62140858	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62140859	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62142337	1.00[AFR][1000 genomes]
rs62142339	1.00[AFR][1000 genomes]
rs72812377	1.00[AFR][1000 genomes]
rs72813949	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72813958	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755713	chr2:58653580-58782707	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1012213	chr2:58671881-58893730	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv535736	chr2:58671881-58893730	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv874203	chr2:58696996-58820417	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58724800-58749000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:58740400-58748600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:58741600-58745200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:58741600-58747000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:58741600-58747200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:58741600-58748800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:58741800-58747000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:58741800-58747200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:58742000-58746200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:58742000-58747000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:58742000-58747000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:58742000-58749000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr2:58742000-58749200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr2:58744000-58748800	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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