Variant report

Variant	rs10490330
Chromosome Location	chr2:39908353-39908354
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10170450	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10193803	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10196294	0.85[ASN][1000 genomes]
rs10490331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13383590	1.00[AMR][1000 genomes]
rs13384630	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13405420	1.00[AMR][1000 genomes]
rs13422740	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13423235	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs13427938	0.85[ASN][1000 genomes]
rs13431221	1.00[AMR][1000 genomes]
rs17024139	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73927037	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873889	chr2:39830183-39950482	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833870	chr2:39837022-40026024	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39895800-39913200	Weak transcription	Fetal Brain Male	brain
2	chr2:39901600-39910000	Weak transcription	Right Ventricle	heart
3	chr2:39905400-39916600	Enhancers	Fetal Heart	heart
4	chr2:39905800-39909000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:39907200-39908400	Weak transcription	Left Ventricle	heart
6	chr2:39907400-39908600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:39907400-39909600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:39907400-39913000	Weak transcription	Fetal Kidney	kidney
9	chr2:39907600-39910600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:39907600-39913000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:39907600-39913200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:39907600-39922200	Weak transcription	HSMM	muscle
13	chr2:39908000-39908600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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