Variant report

Variant	rs13431221
Chromosome Location	chr2:39891599-39891600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10170450	1.00[AMR][1000 genomes]
rs10490330	1.00[AMR][1000 genomes]
rs10490331	1.00[AMR][1000 genomes]
rs13383590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13384630	1.00[AMR][1000 genomes]
rs13405420	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13422740	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17024139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873889	chr2:39830183-39950482	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833870	chr2:39837022-40026024	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39885600-39893600	Weak transcription	Fetal Brain Male	brain
2	chr2:39888400-39892400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:39888600-39892000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:39888600-39892400	Weak transcription	Brain Angular Gyrus	brain
5	chr2:39889400-39891800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:39889800-39892200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:39890000-39892600	Weak transcription	HSMMtube	muscle
8	chr2:39890400-39892400	Enhancers	Fetal Heart	heart
9	chr2:39890600-39891800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:39890800-39891600	Enhancers	HSMM	muscle
11	chr2:39891200-39894000	Active TSS	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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