Variant report

Variant	rs10490339
Chromosome Location	chr2:39777931-39777932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:39772343..39775422-chr2:39777666..39780390,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13410300	1.00[AMR][1000 genomes]
rs17023966	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833858	chr2:39684483-39856498	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39762200-39785000	Weak transcription	HSMMtube	muscle
2	chr2:39770800-39789600	Weak transcription	Left Ventricle	heart
3	chr2:39773200-39778200	Enhancers	HMEC	breast
4	chr2:39774200-39778000	Enhancers	Placenta	Placenta
5	chr2:39775800-39780400	Enhancers	HepG2	liver
6	chr2:39776200-39778000	Enhancers	Pancreas	Pancrea
7	chr2:39776400-39778000	Enhancers	Fetal Intestine Large	intestine
8	chr2:39776400-39778400	Enhancers	Stomach Mucosa	stomach
9	chr2:39776400-39779000	Enhancers	Fetal Intestine Small	intestine
10	chr2:39776600-39778600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr2:39776800-39778000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:39776800-39778000	Enhancers	Duodenum Mucosa	Duodenum
13	chr2:39776800-39778200	Enhancers	K562	blood
14	chr2:39777000-39778400	Enhancers	Fetal Kidney	kidney
15	chr2:39777000-39778800	Enhancers	Fetal Heart	heart
16	chr2:39777000-39779200	Enhancers	HUVEC	blood vessel
17	chr2:39777200-39778000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr2:39777200-39778400	Enhancers	Liver	Liver
19	chr2:39777400-39778800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:39777600-39778000	Enhancers	Fetal Lung	lung
21	chr2:39777600-39778200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr2:39777600-39778400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:39777600-39778400	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr2:39777600-39778400	Enhancers	NH-A	brain
25	chr2:39777600-39778600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:39777600-39778800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr2:39777600-39779200	Enhancers	Hela-S3	cervix
28	chr2:39777800-39778000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:39777800-39778000	Enhancers	Gastric	stomach
30	chr2:39777800-39778200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr2:39777800-39778200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:39777800-39778200	Enhancers	Osteobl	bone
33	chr2:39777800-39778400	Enhancers	A549	lung
34	chr2:39777800-39778600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr2:39777800-39778600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:39777800-39778600	Enhancers	HSMM	muscle
37	chr2:39777800-39778600	Enhancers	NHEK	skin

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