Variant report

Variant	rs13410300
Chromosome Location	chr2:39757510-39757511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:39750470..39752970-chr2:39756347..39759099,2	K562	blood:
2	chr2:39662377..39665156-chr2:39756764..39759540,3	MCF-7	breast:
3	chr2:39750470..39752970-chr2:39756347..39759099,3	K562	blood:

Variant related genes	Relation type
ENSG00000231312	Chromatin interaction
ENSG00000011566	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10182967	1.00[EUR][1000 genomes]
rs10183115	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10185836	1.00[EUR][1000 genomes]
rs10194751	1.00[EUR][1000 genomes]
rs10207329	1.00[EUR][1000 genomes]
rs10490339	1.00[AMR][1000 genomes]
rs13398961	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13414845	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13415549	1.00[EUR][1000 genomes]
rs13430261	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17023966	1.00[AMR][1000 genomes]
rs28667057	1.00[EUR][1000 genomes]
rs28885808	1.00[EUR][1000 genomes]
rs6742173	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833858	chr2:39684483-39856498	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39749400-39758000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:39749400-39761000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:39750000-39761000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:39750800-39760200	Weak transcription	Gastric	stomach
5	chr2:39751200-39760400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:39751400-39760200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:39752400-39757600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:39752600-39760400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:39752600-39760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:39753000-39758000	Weak transcription	Placenta	Placenta
11	chr2:39753200-39760200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:39753400-39757600	Weak transcription	NH-A	brain
13	chr2:39753400-39758000	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:39753400-39761000	Weak transcription	HSMMtube	muscle
15	chr2:39753400-39768400	Weak transcription	Right Ventricle	heart
16	chr2:39753400-39768600	Weak transcription	Right Atrium	heart
17	chr2:39753600-39758200	Weak transcription	Lung	lung
18	chr2:39753600-39767000	Weak transcription	Psoas Muscle	Psoas
19	chr2:39754400-39757600	Weak transcription	HepG2	liver
20	chr2:39755000-39757600	Weak transcription	GM12878-XiMat	blood
21	chr2:39755200-39757600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr2:39756600-39758400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:39756600-39758600	Enhancers	NHDF-Ad	bronchial
24	chr2:39756800-39758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:39756800-39758600	Enhancers	Muscle Satellite Cultured Cells	--
26	chr2:39757000-39758000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:39757000-39758000	Enhancers	NHEK	skin
28	chr2:39757000-39758200	Weak transcription	Left Ventricle	heart
29	chr2:39757000-39758400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:39757000-39758400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:39757000-39758400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:39757000-39758400	Enhancers	HSMM	muscle
33	chr2:39757000-39758600	Enhancers	HUVEC	blood vessel
34	chr2:39757000-39758600	Enhancers	Osteobl	bone
35	chr2:39757200-39757800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:39757200-39758000	Enhancers	Hela-S3	cervix
37	chr2:39757200-39758200	Enhancers	Fetal Kidney	kidney
38	chr2:39757200-39758400	Enhancers	Fetal Heart	heart
39	chr2:39757200-39758600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr2:39757200-39758600	Enhancers	NHLF	lung
41	chr2:39757200-39761800	Weak transcription	Aorta	Aorta
42	chr2:39757400-39757600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:39757400-39758000	Enhancers	Dnd41	blood
44	chr2:39757400-39758400	Enhancers	Adipose Nuclei	Adipose
45	chr2:39757400-39758600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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