Variant report

Variant	rs10490656
Chromosome Location	chr2:37231708-37231709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37045354..37047713-chr2:37230824..37232867,2	MCF-7	breast:
2	chr2:37227746..37229597-chr2:37231248..37232780,2	K562	blood:
3	chr2:37193008..37196048-chr2:37229865..37232262,3	MCF-7	breast:
4	chr2:37007113..37008064-chr2:37231570..37232413,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115808	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10048628	1.00[CHB][hapmap]
rs10167453	1.00[CHB][hapmap]
rs10183153	1.00[ASN][1000 genomes]
rs13410628	1.00[CHB][hapmap]
rs17332671	0.85[CEU][hapmap]
rs17332720	1.00[CHB][hapmap]
rs17443878	1.00[MKK][hapmap]
rs17498637	1.00[CHB][hapmap]
rs17505250	1.00[CHB][hapmap]
rs2110882	1.00[CHB][hapmap]
rs3770768	1.00[CHB][hapmap]
rs4648186	1.00[CHB][hapmap]
rs7577081	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv456363	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv581470	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv873879	chr2:37200033-37299145	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv581471	chr2:37213186-37257386	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10490656	HEATR5B	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37194800-37232400	Weak transcription	NHLF	lung
2	chr2:37195200-37252800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:37195400-37248600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:37209000-37290200	Weak transcription	Small Intestine	intestine
5	chr2:37211400-37238200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr2:37212800-37232000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:37214200-37248400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr2:37216000-37239800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:37219200-37256400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr2:37220000-37239600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:37221000-37307600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:37222400-37232200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:37223000-37232400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:37223200-37236200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:37223400-37232000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr2:37223400-37233600	Strong transcription	Fetal Thymus	thymus
17	chr2:37223400-37236000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr2:37223400-37282600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr2:37223400-37300400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr2:37223600-37233800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:37223600-37235400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr2:37224000-37233200	Strong transcription	Primary hematopoietic stem cells	blood
23	chr2:37224000-37233400	Strong transcription	Stomach Smooth Muscle	stomach
24	chr2:37224000-37234600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:37224000-37236000	Strong transcription	Adipose Nuclei	Adipose
26	chr2:37224000-37236000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr2:37224000-37238600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr2:37224000-37256000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr2:37224000-37270600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:37224200-37232600	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr2:37224200-37232600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr2:37224200-37235400	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr2:37224400-37233000	Strong transcription	Fetal Lung	lung
34	chr2:37224400-37236000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:37224400-37236600	Strong transcription	Left Ventricle	heart
36	chr2:37224600-37248200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr2:37225000-37233000	Strong transcription	Liver	Liver
38	chr2:37225200-37236000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:37225200-37236000	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr2:37225200-37239800	Weak transcription	Colonic Mucosa	Colon
41	chr2:37225400-37233800	Strong transcription	Primary T cells from cord blood	blood
42	chr2:37225400-37236000	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr2:37225400-37237000	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr2:37225400-37238800	Strong transcription	Fetal Muscle Leg	muscle
45	chr2:37225800-37234800	Weak transcription	Fetal Kidney	kidney
46	chr2:37226000-37232600	Strong transcription	Fetal Stomach	stomach
47	chr2:37226200-37232800	Strong transcription	Brain Germinal Matrix	brain
48	chr2:37226200-37232800	Strong transcription	Thymus	Thymus
49	chr2:37226200-37237600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr2:37226400-37236200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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