Variant report

Variant	rs7577081
Chromosome Location	chr2:37221153-37221154
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37219829..37222181-chr2:37235362..37237238,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10048628	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1008838	0.85[CEU][hapmap]
rs10167453	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10177166	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185540	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198470	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490656	1.00[CHB][hapmap]
rs13405972	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13410628	1.00[CHB][hapmap]
rs13416820	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420719	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432823	0.88[CEU][hapmap]
rs17332720	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17498637	1.00[CHB][hapmap]
rs17505250	1.00[CHB][hapmap]
rs2110882	1.00[CHB][hapmap]
rs2541000	0.88[CEU][hapmap]
rs28482188	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770768	1.00[CHB][hapmap]
rs4648186	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv456363	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv581470	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv873879	chr2:37200033-37299145	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv581471	chr2:37213186-37257386	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37194400-37229000	Weak transcription	Gastric	stomach
2	chr2:37194800-37226400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:37194800-37232400	Weak transcription	NHLF	lung
4	chr2:37195000-37224200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:37195200-37225400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:37195200-37252800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:37195400-37227400	Weak transcription	A549	lung
8	chr2:37195400-37227600	Weak transcription	HUVEC	blood vessel
9	chr2:37195400-37248600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:37195600-37231400	Weak transcription	Brain Angular Gyrus	brain
11	chr2:37195800-37229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:37196200-37226400	Weak transcription	Dnd41	blood
13	chr2:37201000-37225200	Weak transcription	K562	blood
14	chr2:37202000-37228800	Weak transcription	Spleen	Spleen
15	chr2:37202800-37228800	Weak transcription	Aorta	Aorta
16	chr2:37203600-37231600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:37204200-37227600	Weak transcription	HepG2	liver
18	chr2:37204400-37228800	Weak transcription	Esophagus	oesophagus
19	chr2:37205200-37229400	Weak transcription	Brain Substantia Nigra	brain
20	chr2:37205600-37225200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:37206800-37227400	Weak transcription	NHEK	skin
22	chr2:37207000-37225200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr2:37207800-37224400	Weak transcription	Fetal Lung	lung
24	chr2:37207800-37225400	Weak transcription	Primary B cells from cord blood	blood
25	chr2:37208600-37226400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:37208800-37227600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:37209000-37225400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:37209000-37225400	Weak transcription	GM12878-XiMat	blood
29	chr2:37209000-37228600	Weak transcription	Psoas Muscle	Psoas
30	chr2:37209000-37290200	Weak transcription	Small Intestine	intestine
31	chr2:37210200-37227600	Weak transcription	Fetal Heart	heart
32	chr2:37210600-37224000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr2:37211200-37221800	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr2:37211400-37238200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr2:37211800-37221200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr2:37212400-37229000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr2:37212600-37225400	Weak transcription	HSMM	muscle
38	chr2:37212800-37232000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr2:37213200-37221800	Strong transcription	Primary B cells from peripheral blood	blood
40	chr2:37213200-37227400	Weak transcription	Hela-S3	cervix
41	chr2:37214200-37248400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr2:37214400-37225600	Weak transcription	Fetal Kidney	kidney
43	chr2:37214400-37226200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr2:37214600-37224200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:37214600-37229000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr2:37214600-37229200	Weak transcription	HSMMtube	muscle
47	chr2:37215200-37226400	Weak transcription	Colon Smooth Muscle	Colon
48	chr2:37215200-37231000	Weak transcription	HMEC	breast
49	chr2:37215400-37227600	Weak transcription	Stomach Mucosa	stomach
50	chr2:37215600-37225000	Weak transcription	Liver	Liver

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