Variant report

Variant	rs10490722
Chromosome Location	chr2:67807119-67807120
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10174552	0.88[EUR][1000 genomes]
rs10182699	0.88[EUR][1000 genomes]
rs10207177	0.88[EUR][1000 genomes]
rs10490726	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11126135	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11126136	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12105010	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12465584	0.84[EUR][1000 genomes]
rs12468607	0.84[EUR][1000 genomes]
rs12473649	0.84[EUR][1000 genomes]
rs12476693	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387688	0.81[EUR][1000 genomes]
rs17033827	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17033869	0.84[EUR][1000 genomes]
rs17033883	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17033913	0.84[EUR][1000 genomes]
rs17033915	0.84[EUR][1000 genomes]
rs17033919	0.84[EUR][1000 genomes]
rs17034031	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17685753	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2270349	0.88[EUR][1000 genomes]
rs28535096	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2861647	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4316924	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4365448	0.84[EUR][1000 genomes]
rs4567918	0.84[EUR][1000 genomes]
rs58817440	0.84[EUR][1000 genomes]
rs60027608	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs60984428	0.88[EUR][1000 genomes]
rs62156277	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62156281	0.88[EUR][1000 genomes]
rs62156324	0.84[EUR][1000 genomes]
rs62156325	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62156326	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62156327	0.84[EUR][1000 genomes]
rs62157972	0.84[AMR][1000 genomes]
rs6706021	0.88[EUR][1000 genomes]
rs6708126	0.84[EUR][1000 genomes]
rs72903715	0.83[EUR][1000 genomes]
rs7420308	0.88[EUR][1000 genomes]
rs7423926	0.88[EUR][1000 genomes]
rs7586016	0.88[EUR][1000 genomes]
rs7592937	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7607299	0.83[EUR][1000 genomes]
rs9309401	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67805400-67807800	Enhancers	Fetal Lung	lung
2	chr2:67806200-67807200	Enhancers	Dnd41	blood
3	chr2:67806200-67807400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:67806200-67807600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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