Variant report

Variant	rs62156325
Chromosome Location	chr2:67848671-67848672
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10174552	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10182699	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10207177	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10490722	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10490726	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11126136	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12105010	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12465584	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12468607	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12473649	0.96[EUR][1000 genomes]
rs12476693	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13387688	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1549783	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17033869	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17033883	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17033913	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17033915	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17033919	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17034031	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17685753	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2270349	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28535096	0.80[EUR][1000 genomes]
rs2861647	0.82[EUR][1000 genomes]
rs4316924	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4365448	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4567918	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58817440	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60984428	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62156277	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62156281	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62156324	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156326	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156327	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62157972	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6706021	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6708126	0.96[EUR][1000 genomes]
rs72903715	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72903729	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7420308	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7423926	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7586016	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7592937	0.82[EUR][1000 genomes]
rs7607299	0.92[EUR][1000 genomes]
rs9309401	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67844600-67849400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:67845600-67849000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:67847200-67852400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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