Variant report

Variant	rs10490937
Chromosome Location	chr10:43086992-43086993
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43085459..43087807-chr10:43088935..43091913,2	K562	blood:

Variant related genes	Relation type
ENSG00000272373	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11239687	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs149350	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs158367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs158368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs158370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs158371	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs158372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs158374	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs158380	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs158381	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs158383	1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs158387	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1807366	0.92[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];0.90[YRI][hapmap]
rs209382	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs209383	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs209384	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs289184	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs289185	0.91[ASN][1000 genomes]
rs289189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs289190	0.92[ASN][1000 genomes]
rs289191	0.92[ASN][1000 genomes]
rs289192	0.92[ASN][1000 genomes]
rs491625	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs504209	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs521852	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs535169	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];0.90[YRI][hapmap]
rs594295	0.86[ASN][1000 genomes]
rs615096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs626062	0.86[ASN][1000 genomes]
rs655987	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs787311	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7924018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550670	chr10:42725663-43089965	Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43076000-43088400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:43076800-43087000	Weak transcription	Fetal Heart	heart
3	chr10:43077600-43088000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:43077800-43109600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:43080800-43088000	Weak transcription	Right Ventricle	heart
6	chr10:43081000-43087200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:43081000-43087800	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:43081000-43087800	Weak transcription	Psoas Muscle	Psoas
9	chr10:43081400-43087800	Weak transcription	Brain Anterior Caudate	brain
10	chr10:43081800-43092000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
11	chr10:43082000-43092200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:43082200-43092600	ZNF genes & repeats	Liver	Liver
13	chr10:43082600-43091400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr10:43082800-43087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:43083000-43087200	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:43083000-43091400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr10:43083000-43091400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
18	chr10:43083000-43091400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr10:43083000-43094800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr10:43083200-43091200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
21	chr10:43083200-43091400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
22	chr10:43083400-43091400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
23	chr10:43083800-43091400	ZNF genes & repeats	Primary T cells from cord blood	blood
24	chr10:43084400-43087800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:43084400-43088800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:43084600-43091400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
27	chr10:43084800-43092600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:43085000-43087200	Weak transcription	Fetal Brain Male	brain
29	chr10:43085000-43087400	ZNF genes & repeats	Fetal Intestine Large	intestine
30	chr10:43085000-43092400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:43085200-43088000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:43085200-43091200	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chr10:43085200-43096400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
34	chr10:43085400-43091200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
35	chr10:43085600-43087200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:43085600-43087200	Strong transcription	Dnd41	blood
37	chr10:43085600-43091400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:43085600-43092400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:43085800-43087200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr10:43085800-43088200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:43086000-43090600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:43086000-43091400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
43	chr10:43086000-43091400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
44	chr10:43086200-43090400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:43086200-43091000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
46	chr10:43086200-43091200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:43086200-43091200	Strong transcription	Fetal Thymus	thymus
48	chr10:43086200-43091200	ZNF genes & repeats	A549	lung
49	chr10:43086400-43087400	Strong transcription	K562	blood
50	chr10:43086400-43088200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

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