Variant report

Variant	rs158372
Chromosome Location	chr10:43098863-43098864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10490937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11239687	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs149350	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs158367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs158368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs158370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs158371	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs158374	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs158380	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs158381	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs158383	0.91[ASN][1000 genomes]
rs158387	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs209382	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs209383	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs209384	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs289184	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs289185	0.89[ASN][1000 genomes]
rs289189	0.91[ASN][1000 genomes]
rs289190	0.91[ASN][1000 genomes]
rs289191	0.91[ASN][1000 genomes]
rs289192	0.91[ASN][1000 genomes]
rs491625	0.88[ASN][1000 genomes]
rs504209	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs521852	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs594295	0.85[ASN][1000 genomes]
rs615096	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs626062	0.85[ASN][1000 genomes]
rs655987	0.85[ASN][1000 genomes]
rs787311	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7924018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
12	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	nsv975036	chr10:43090222-43132879	ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43077800-43109600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:43089600-43123600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:43089800-43099800	Weak transcription	Brain Angular Gyrus	brain
4	chr10:43089800-43107600	Weak transcription	HepG2	liver
5	chr10:43089800-43126000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:43089800-43133000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:43089800-43133000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:43089800-43133000	Weak transcription	Right Ventricle	heart
9	chr10:43090000-43119200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:43090000-43119200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:43090200-43108600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:43090400-43099200	Weak transcription	Placenta	Placenta
13	chr10:43090400-43107200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:43090400-43108000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:43090400-43118600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:43090600-43104800	Weak transcription	Hela-S3	cervix
17	chr10:43090600-43107200	Weak transcription	K562	blood
18	chr10:43090800-43133000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:43091000-43123800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:43091200-43100200	Weak transcription	Fetal Brain Male	brain
21	chr10:43091200-43107800	Weak transcription	Fetal Thymus	thymus
22	chr10:43091200-43108800	Weak transcription	Adipose Nuclei	Adipose
23	chr10:43091200-43123600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr10:43091200-43126000	Weak transcription	Small Intestine	intestine
25	chr10:43091200-43132800	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:43091400-43099200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:43091400-43099200	Weak transcription	Fetal Brain Female	brain
28	chr10:43091400-43101200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:43091400-43101200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:43091400-43101400	Weak transcription	Ovary	ovary
31	chr10:43091400-43107600	Weak transcription	Psoas Muscle	Psoas
32	chr10:43091400-43108400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:43091400-43119600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:43091400-43132400	Weak transcription	HMEC	breast
35	chr10:43091400-43132800	Weak transcription	Colonic Mucosa	Colon
36	chr10:43091800-43107800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:43093800-43100200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:43094000-43099200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:43094000-43099200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr10:43094000-43100000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:43094000-43108400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:43094000-43108600	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:43094000-43119400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:43094000-43119400	Weak transcription	Spleen	Spleen
45	chr10:43094200-43099200	Weak transcription	Gastric	stomach
46	chr10:43094200-43099200	Weak transcription	Left Ventricle	heart
47	chr10:43094200-43100000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:43094200-43100600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:43094200-43105200	Weak transcription	Fetal Kidney	kidney
50	chr10:43094200-43107600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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