Variant report

Variant	rs10491034
Chromosome Location	chr10:49810367-49810368
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10745280	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10776627	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10776628	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101394	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101397	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101399	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11817042	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851553	0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4838631	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61072239	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs935283	0.97[ASN][1000 genomes]
rs935284	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv540623	chr10:49805087-49819765	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv540624	chr10:49805087-49822634	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49794400-49810600	Enhancers	Brain Substantia Nigra	brain
2	chr10:49797400-49812200	Weak transcription	Right Atrium	heart
3	chr10:49804400-49810800	Weak transcription	Gastric	stomach
4	chr10:49805600-49811000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:49807000-49811000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:49807600-49811600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:49808000-49810400	Enhancers	HUVEC	blood vessel
8	chr10:49808000-49811400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:49808000-49811800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:49808000-49811800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:49808000-49812000	Weak transcription	Ovary	ovary
12	chr10:49808400-49810400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:49808400-49811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:49808800-49810400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr10:49808800-49810600	Enhancers	HMEC	breast
16	chr10:49809200-49810600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:49809200-49810600	Weak transcription	Brain Anterior Caudate	brain
18	chr10:49809200-49812200	Weak transcription	Aorta	Aorta
19	chr10:49809400-49810400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:49809400-49810600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:49809600-49810600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:49809800-49810400	Flanking Active TSS	NH-A	brain
23	chr10:49809800-49812600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:49810000-49810400	Weak transcription	HSMMtube	muscle
25	chr10:49810000-49810600	Enhancers	Brain Hippocampus Middle	brain
26	chr10:49810000-49811200	Flanking Active TSS	NHDF-Ad	bronchial
27	chr10:49810000-49811400	Transcr. at gene 5' and 3'	HSMM	muscle
28	chr10:49810000-49812000	Transcr. at gene 5' and 3'	NHLF	lung
29	chr10:49810000-49812400	Flanking Active TSS	Osteobl	bone
30	chr10:49810000-49813000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:49810200-49810600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:49810200-49810800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:49810200-49810800	Enhancers	Brain Angular Gyrus	brain
34	chr10:49810200-49811600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:49810200-49811600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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