Variant report

Variant	rs10776627
Chromosome Location	chr10:49804554-49804555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49803449..49806328-chr10:49810436..49812286,2	K562	blood:
2	chr10:49784932..49786991-chr10:49803496..49805915,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10491034	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10745280	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10776628	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11817042	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3851553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4838631	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61072239	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs935283	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs935284	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1046588	chr10:49790254-49806169	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10776627	COASY	trans	lymphoblastoid	RTeQTL

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49794400-49810600	Enhancers	Brain Substantia Nigra	brain
2	chr10:49797400-49812200	Weak transcription	Right Atrium	heart
3	chr10:49798600-49805600	Weak transcription	HSMMtube	muscle
4	chr10:49798800-49806000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:49798800-49806800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:49798800-49808200	Weak transcription	HMEC	breast
7	chr10:49799400-49808000	Weak transcription	HUVEC	blood vessel
8	chr10:49799400-49808800	Weak transcription	NH-A	brain
9	chr10:49800600-49809400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:49800800-49807800	Weak transcription	Ovary	ovary
11	chr10:49801600-49804600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:49801600-49805000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:49802800-49804800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:49803000-49804800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:49803000-49804800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:49803000-49807400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:49803200-49804600	Weak transcription	Brain Anterior Caudate	brain
18	chr10:49803400-49804600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:49803400-49804800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr10:49803400-49804800	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr10:49803400-49805000	Weak transcription	Brain Angular Gyrus	brain
22	chr10:49803400-49807400	Strong transcription	Osteobl	bone
23	chr10:49803600-49805200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:49803800-49804800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:49803800-49809600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:49804000-49807800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:49804000-49808400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:49804200-49805000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:49804200-49807000	Strong transcription	NHLF	lung
30	chr10:49804200-49807400	Genic enhancers	HSMM	muscle
31	chr10:49804200-49809600	Enhancers	Brain Hippocampus Middle	brain
32	chr10:49804400-49804600	Enhancers	H1 Cell Line	embryonic stem cell
33	chr10:49804400-49804800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:49804400-49804800	Weak transcription	NHDF-Ad	bronchial
35	chr10:49804400-49810800	Weak transcription	Gastric	stomach

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