Variant report

Variant	rs10492058
Chromosome Location	chr12:4886104-4886105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10849132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs10849135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs11063325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11063330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11831080	1.00[JPT][hapmap]
rs11835306	0.85[EUR][1000 genomes]
rs12367189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs12369972	0.85[AFR][1000 genomes]
rs12371407	0.88[EUR][1000 genomes]
rs16931634	1.00[JPT][hapmap]
rs1860346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7295581	0.88[EUR][1000 genomes]
rs7296976	0.88[EUR][1000 genomes]
rs766506	1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7957766	0.85[EUR][1000 genomes]
rs7960375	0.86[EUR][1000 genomes]
rs7970332	0.86[EUR][1000 genomes]
rs7975622	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10492058	ERC1	cis	parietal	SCAN
rs10492058	OSTC	trans	parietal	SCAN
rs10492058	WNK1	cis	parietal	SCAN
rs10492058	PTPN6	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4873200-4889800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:4873400-4889400	Weak transcription	Ovary	ovary
3	chr12:4882200-4893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:4882800-4889800	Weak transcription	Fetal Brain Female	brain
5	chr12:4882800-4891800	Weak transcription	Brain Germinal Matrix	brain
6	chr12:4884400-4918200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:4885000-4886200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:4885600-4888800	Weak transcription	Brain Substantia Nigra	brain
9	chr12:4885800-4890400	Weak transcription	Brain Anterior Caudate	brain
10	chr12:4886000-4886600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr12:4886000-4888400	Weak transcription	Brain Hippocampus Middle	brain
12	chr12:4886000-4890800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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