Variant report

Variant	rs10849132
Chromosome Location	chr12:4828610-4828611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10492058	0.89[EUR][1000 genomes]
rs10849135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11063325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11063330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831080	1.00[JPT][hapmap]
rs11835306	0.96[EUR][1000 genomes]
rs12367189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371407	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931634	1.00[JPT][hapmap]
rs1860346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7295581	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296976	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957766	0.96[EUR][1000 genomes]
rs7960375	0.97[EUR][1000 genomes]
rs7970332	0.97[EUR][1000 genomes]
rs7975622	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1054218	chr12:4819576-4882667	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4811200-4833600	Weak transcription	Brain Germinal Matrix	brain
2	chr12:4825800-4838200	Weak transcription	Gastric	stomach
3	chr12:4826800-4830400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:4827000-4829000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:4827200-4830400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr12:4827400-4849600	Weak transcription	Fetal Brain Female	brain
7	chr12:4827800-4829000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:4828000-4828800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
9	chr12:4828200-4829000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:4828200-4830600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:4828400-4829000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr12:4828400-4829600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:4828400-4830400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr12:4828600-4828800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr12:4828600-4828800	Flanking Active TSS	Fetal Intestine Large	intestine
16	chr12:4828600-4828800	Flanking Active TSS	Fetal Intestine Small	intestine
17	chr12:4828600-4828800	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr12:4828600-4829000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr12:4828600-4829200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr12:4828600-4829200	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr12:4828600-4830400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:4828600-4830400	Active TSS	Rectal Smooth Muscle	rectum
23	chr12:4828600-4830600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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