Variant report

Variant	rs10492820
Chromosome Location	chr16:72402281-72402282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11075927	0.91[AFR][1000 genomes]
rs11075928	0.91[AFR][1000 genomes]
rs11860402	1.00[CEU][hapmap]
rs11860511	0.93[AFR][1000 genomes]
rs11861074	0.90[AFR][1000 genomes]
rs12051317	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12103150	0.85[LWK][hapmap];0.92[YRI][hapmap]
rs12595984	0.91[ASN][1000 genomes]
rs12596827	0.86[ASN][1000 genomes]
rs12597916	0.91[ASN][1000 genomes]
rs12598100	0.92[ASN][1000 genomes]
rs12600175	0.92[ASN][1000 genomes]
rs13333424	0.80[AFR][1000 genomes]
rs13333480	0.95[AFR][1000 genomes]
rs13338269	0.88[AFR][1000 genomes]
rs13338313	0.88[AFR][1000 genomes]
rs1429069	0.80[AFR][1000 genomes]
rs1437196	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16970828	0.87[AFR][1000 genomes]
rs16970845	0.92[ASN][1000 genomes]
rs16970852	0.95[ASN][1000 genomes]
rs16970879	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16970888	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16970895	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16970897	0.80[AFR][1000 genomes]
rs16970901	0.85[AMR][1000 genomes]
rs16970906	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16970922	0.80[ASN][1000 genomes]
rs16970929	0.80[AFR][1000 genomes]
rs16970987	0.86[AMR][1000 genomes]
rs2059901	0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2161659	0.85[ASN][1000 genomes]
rs28393088	0.87[AFR][1000 genomes]
rs28679760	0.90[AFR][1000 genomes]
rs28706881	0.90[AFR][1000 genomes]
rs28712432	0.95[AFR][1000 genomes]
rs28823672	0.90[ASN][1000 genomes]
rs28876074	0.90[ASN][1000 genomes]
rs28888757	0.91[AFR][1000 genomes]
rs35917623	0.93[AFR][1000 genomes]
rs4788468	0.87[ASN][1000 genomes]
rs4788627	0.92[ASN][1000 genomes]
rs4788629	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4788631	0.96[ASN][1000 genomes]
rs4788633	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4788634	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4788635	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4788637	0.82[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55806458	0.82[AFR][1000 genomes]
rs58097957	0.87[ASN][1000 genomes]
rs59875457	0.93[AFR][1000 genomes]
rs60144415	0.90[ASN][1000 genomes]
rs60962205	0.85[AMR][1000 genomes]
rs7187532	0.89[AFR][1000 genomes]
rs7187674	0.84[AFR][1000 genomes]
rs7188632	0.87[AFR][1000 genomes]
rs7197250	0.91[AFR][1000 genomes]
rs7198345	0.85[AFR][1000 genomes]
rs7198450	0.88[AFR][1000 genomes]
rs7200007	0.88[AFR][1000 genomes]
rs726887	0.86[AFR][1000 genomes]
rs73587415	0.90[AFR][1000 genomes]
rs8046891	0.84[AFR][1000 genomes]
rs8051420	0.92[YRI][hapmap]
rs8051595	0.91[AFR][1000 genomes]
rs8052117	0.89[AFR][1000 genomes]
rs8053288	0.88[AFR][1000 genomes]
rs8063144	0.87[AFR][1000 genomes]
rs873899	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9302636	0.90[AFR][1000 genomes]
rs9889208	0.82[AFR][1000 genomes]
rs9921281	0.90[AFR][1000 genomes]
rs9921921	0.91[AFR][1000 genomes]
rs9922597	0.93[AFR][1000 genomes]
rs9926141	0.88[AFR][1000 genomes]
rs9928119	0.91[AFR][1000 genomes]
rs9929864	0.88[AFR][1000 genomes]
rs9930862	0.93[AFR][1000 genomes]
rs9934365	0.90[AFR][1000 genomes]
rs9934457	0.91[AFR][1000 genomes]
rs9937973	0.90[AFR][1000 genomes]
rs9938153	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1063172	chr16:72342110-72537808	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv542947	chr16:72342110-72537808	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1067525	chr16:72342110-72602796	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv542948	chr16:72342110-72602796	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1057127	chr16:72375524-72509686	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv542949	chr16:72375524-72509686	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72367200-72405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:72367200-72423600	Weak transcription	Thymus	Thymus
3	chr16:72397000-72404600	Weak transcription	Fetal Kidney	kidney
4	chr16:72397200-72413800	Weak transcription	HepG2	liver
5	chr16:72397600-72403400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:72399600-72402800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:72400600-72422200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:72400800-72420000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr16:72401400-72408200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr16:72401800-72403000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr16:72402200-72403200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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