Variant report

Variant	rs10493407
Chromosome Location	chr1:66991699-66991700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12023337	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1338198	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856317	1.00[CEU][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2121054	0.81[EUR][1000 genomes]
rs2312151	0.93[JPT][hapmap]
rs6690227	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10493407	SGIP1	cis	cerebellum	SCAN
rs10493407	IL23R	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66987800-66992600	Weak transcription	HUVEC	blood vessel
2	chr1:66988000-66993400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:66988200-66993000	Weak transcription	NHDF-Ad	bronchial
4	chr1:66988400-66998200	Weak transcription	Osteobl	bone
5	chr1:66990600-66992000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:66990800-66994800	Enhancers	NHLF	lung
7	chr1:66991000-66992000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:66991200-66992000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:66991400-66991800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:66991400-66992000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr1:66991600-66991800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:66991600-66992000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:66991600-66993600	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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