Variant report

Variant	rs6690227
Chromosome Location	chr1:66989884-66989885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10493407	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12023337	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1338198	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856317	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2121054	0.81[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66987000-66990400	Enhancers	Hela-S3	cervix
2	chr1:66987200-66990200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:66987800-66992600	Weak transcription	HUVEC	blood vessel
4	chr1:66988000-66990800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:66988000-66993400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:66988200-66993000	Weak transcription	NHDF-Ad	bronchial
7	chr1:66988400-66991600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:66988400-66998200	Weak transcription	Osteobl	bone
9	chr1:66989200-66990000	Enhancers	Fetal Heart	heart
10	chr1:66989200-66990800	Enhancers	HSMMtube	muscle
11	chr1:66989200-66991000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:66989400-66990000	Enhancers	NHLF	lung
13	chr1:66989600-66990800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:66989800-66991200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:66989800-66991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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