Variant report

Variant	rs10493793
Chromosome Location	chr1:86927000-86927001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11805577	1.00[EUR][1000 genomes]
rs17129186	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28522658	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4647844	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4647848	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55719851	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56321760	1.00[EUR][1000 genomes]
rs56398778	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744302	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744320	1.00[EUR][1000 genomes]
rs5744324	1.00[EUR][1000 genomes]
rs5744335	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86914600-86930800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:86917000-86930600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:86922600-86930800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:86925800-86927000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr1:86926400-86927000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:86926600-86927000	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr1:86926600-86927000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:86926600-86927200	Enhancers	Stomach Mucosa	stomach
9	chr1:86926600-86927400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:86926600-86927600	Flanking Active TSS	K562	blood
11	chr1:86926600-86929400	Enhancers	Fetal Thymus	thymus
12	chr1:86926800-86927000	Enhancers	Esophagus	oesophagus
13	chr1:86926800-86927400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr1:86927000-86927400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr1:86927000-86927600	Enhancers	Fetal Heart	heart
16	chr1:86927000-86932000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr1:86927000-86934200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:86927000-86934600	Weak transcription	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links