Variant report

Variant	rs5744302
Chromosome Location	chr1:86934908-86934909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10493793	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11805577	1.00[EUR][1000 genomes]
rs17129186	1.00[EUR][1000 genomes]
rs28522658	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4647844	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4647848	1.00[ASW][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55719851	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56321760	1.00[EUR][1000 genomes]
rs56398778	1.00[EUR][1000 genomes]
rs5744304	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744314	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5744320	1.00[EUR][1000 genomes]
rs5744324	1.00[EUR][1000 genomes]
rs5744335	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003838	chr1:86591841-87212231	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86932600-86935400	Enhancers	Dnd41	blood
2	chr1:86933000-86936000	Weak transcription	NHDF-Ad	bronchial
3	chr1:86933000-86937800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:86933000-86938000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:86933000-86942800	Weak transcription	K562	blood
6	chr1:86933200-86936800	Weak transcription	Osteobl	bone
7	chr1:86934000-86935800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:86934000-86935800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:86934200-86938000	Active TSS	Rectal Mucosa Donor 31	rectum
10	chr1:86934600-86936400	Active TSS	Fetal Intestine Small	intestine
11	chr1:86934600-86938200	Active TSS	Fetal Intestine Large	intestine
12	chr1:86934600-86938800	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr1:86934800-86935400	Active TSS	Rectal Smooth Muscle	rectum
14	chr1:86934800-86936200	Active TSS	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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