Variant report

Variant	rs10494271
Chromosome Location	chr1:152085900-152085901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10157335	0.85[AMR][1000 genomes]
rs13374107	0.83[AMR][1000 genomes]
rs16833804	0.85[AMR][1000 genomes]
rs16833808	0.85[AMR][1000 genomes]
rs16833817	0.85[AMR][1000 genomes]
rs16833835	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833854	0.85[AMR][1000 genomes]
rs56179963	1.00[AMR][1000 genomes]
rs56365520	0.85[AMR][1000 genomes]
rs59596794	0.85[AMR][1000 genomes]
rs60438363	1.00[AMR][1000 genomes]
rs61697019	1.00[AMR][1000 genomes]
rs72995317	0.85[AMR][1000 genomes]
rs74126777	0.83[AMR][1000 genomes]
rs74126788	0.83[AMR][1000 genomes]
rs74126790	1.00[AMR][1000 genomes]
rs74126802	0.85[AMR][1000 genomes]
rs74129506	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv872442	chr1:152054120-152187641	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152085200-152086000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:152085200-152086000	Bivalent Enhancer	Fetal Intestine Large	intestine
3	chr1:152085400-152086000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:152085400-152086000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:152085400-152086000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:152085600-152086000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr1:152085800-152086000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
8	chr1:152085800-152086200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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