Variant report

Variant	rs16833817
Chromosome Location	chr1:152025736-152025737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:152023109..152026981-chr1:152153674..152157448,4	MCF-7	breast:
2	chr1:151880510..151884478-chr1:152021819..152026164,4	MCF-7	breast:
3	chr1:152024636..152025993-chr1:152157493..152159185,17	MCF-7	breast:
4	chr1:152024208..152028585-chr1:152058296..152061997,4	MCF-7	breast:
5	chr1:152025430..152028089-chr1:152082094..152084802,2	MCF-7	breast:
6	chr1:152025442..152027599-chr1:152031049..152032717,2	MCF-7	breast:
7	chr1:152023825..152028705-chr1:152153784..152161918,10	MCF-7	breast:
8	chr1:152025453..152028368-chr1:152034422..152037316,2	MCF-7	breast:
9	chr1:152024797..152025791-chr1:152154887..152155573,4	MCF-7	breast:
10	chr1:151973957..151974462-chr1:152025316..152025829,2	MCF-7	breast:
11	chr1:152004094..152009269-chr1:152022985..152027910,7	K562	blood:
12	chr1:152023701..152026048-chr1:152097145..152099541,2	MCF-7	breast:
13	chr1:152024848..152026371-chr1:152036045..152037587,2	MCF-7	breast:
14	chr1:152024529..152025807-chr1:152157754..152158654,6	MCF-7	breast:
15	chr1:152025717..152026500-chr1:152154875..152155620,2	MCF-7	breast:
16	chr1:151964692..151966290-chr1:152025112..152026807,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000159445	Chromatin interaction
ENSG00000233792	Chromatin interaction
ENSG00000237975	Chromatin interaction
ENSG00000197747	Chromatin interaction
ENSG00000182898	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10494271	0.85[AMR][1000 genomes]
rs13374107	1.00[EUR][1000 genomes]
rs13374906	1.00[EUR][1000 genomes]
rs13375166	1.00[EUR][1000 genomes]
rs13375962	1.00[EUR][1000 genomes]
rs16833656	1.00[EUR][1000 genomes]
rs16833804	1.00[EUR][1000 genomes]
rs16833807	1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs16833808	1.00[EUR][1000 genomes]
rs16833809	0.91[ASN][1000 genomes]
rs16833811	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16833835	0.85[AMR][1000 genomes]
rs2338311	0.91[ASN][1000 genomes]
rs56179963	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56365520	1.00[EUR][1000 genomes]
rs56399868	1.00[EUR][1000 genomes]
rs59596794	1.00[EUR][1000 genomes]
rs60251684	1.00[EUR][1000 genomes]
rs60438363	0.85[AMR][1000 genomes]
rs61697019	0.85[AMR][1000 genomes]
rs72477383	0.91[ASN][1000 genomes]
rs72477384	0.91[ASN][1000 genomes]
rs72477385	0.91[ASN][1000 genomes]
rs72477387	0.91[ASN][1000 genomes]
rs72993684	0.82[ASN][1000 genomes]
rs72993686	0.92[ASN][1000 genomes]
rs72993689	1.00[ASN][1000 genomes]
rs72993691	0.91[ASN][1000 genomes]
rs74126720	1.00[EUR][1000 genomes]
rs74126729	1.00[EUR][1000 genomes]
rs74126732	1.00[EUR][1000 genomes]
rs74126760	1.00[EUR][1000 genomes]
rs74126777	1.00[EUR][1000 genomes]
rs74126788	1.00[EUR][1000 genomes]
rs74126790	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126802	1.00[EUR][1000 genomes]
rs74129506	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7416722	0.91[ASN][1000 genomes]
rs7540075	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases
5	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152025200-152026000	Enhancers	K562	blood
2	chr1:152025400-152025800	Enhancers	Pancreatic Islets	Pancreatic Islet

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