Variant report

Variant	rs16833656
Chromosome Location	chr1:151916692-151916693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151881300..151883232-chr1:151916135..151919010,3	K562	blood:
2	chr1:151915835..151920651-chr1:152004121..152010886,7	MCF-7	breast:
3	chr1:151912468..151914672-chr1:151915878..151918537,2	MCF-7	breast:
4	chr1:151880767..151883017-chr1:151916135..151918351,3	K562	blood:
5	chr1:151902230..151904695-chr1:151916029..151918681,2	K562	blood:
6	chr1:151914726..151916924-chr1:151917247..151919609,3	MCF-7	breast:
7	chr1:151912762..151919992-chr1:151963219..151969467,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197747	Chromatin interaction
ENSG00000229021	Chromatin interaction
ENSG00000163191	Chromatin interaction
ENSG00000159445	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13374107	1.00[EUR][1000 genomes]
rs13374906	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13375166	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13375962	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16833804	1.00[EUR][1000 genomes]
rs16833808	1.00[EUR][1000 genomes]
rs16833817	1.00[EUR][1000 genomes]
rs56179963	1.00[EUR][1000 genomes]
rs56365520	1.00[EUR][1000 genomes]
rs56399868	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59596794	1.00[EUR][1000 genomes]
rs60251684	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61697019	0.80[AFR][1000 genomes]
rs74126720	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74126729	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74126732	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74126760	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74126777	1.00[EUR][1000 genomes]
rs74126788	1.00[EUR][1000 genomes]
rs74126790	1.00[EUR][1000 genomes]
rs74126802	1.00[EUR][1000 genomes]
rs74129506	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547852	chr1:151843044-151955230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151907000-151917400	Weak transcription	Right Atrium	heart
2	chr1:151907600-151916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:151908200-151917000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:151909400-151916800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:151909400-151917000	Weak transcription	Colonic Mucosa	Colon
6	chr1:151909600-151917800	Weak transcription	HUVEC	blood vessel
7	chr1:151912000-151917000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:151912200-151917800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:151913000-151917200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:151913000-151919800	Enhancers	Fetal Intestine Large	intestine
11	chr1:151913200-151916800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:151913200-151917800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:151913200-151919000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:151913800-151917000	Enhancers	Adipose Nuclei	Adipose
15	chr1:151914000-151917000	Weak transcription	Esophagus	oesophagus
16	chr1:151914000-151917000	Weak transcription	Psoas Muscle	Psoas
17	chr1:151914000-151917000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:151914000-151917400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:151914000-151922000	Weak transcription	Spleen	Spleen
20	chr1:151914200-151916800	Weak transcription	HSMM	muscle
21	chr1:151914200-151917000	Weak transcription	Pancreas	Pancrea
22	chr1:151914200-151917400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:151914200-151917800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr1:151914400-151916800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr1:151914400-151917000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:151914400-151917200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:151914400-151917200	Weak transcription	HSMMtube	muscle
28	chr1:151914600-151916800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:151914600-151917000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:151914600-151917400	Weak transcription	Aorta	Aorta
31	chr1:151914600-151918000	Weak transcription	Osteobl	bone
32	chr1:151914800-151916800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:151914800-151916800	Weak transcription	HMEC	breast
34	chr1:151914800-151916800	Weak transcription	NHEK	skin
35	chr1:151914800-151917000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr1:151914800-151917000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr1:151914800-151917000	Weak transcription	Right Ventricle	heart
38	chr1:151914800-151917000	Weak transcription	NH-A	brain
39	chr1:151915000-151917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr1:151915200-151917000	Enhancers	A549	lung
41	chr1:151915200-151917800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr1:151915200-151919600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr1:151915600-151916800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr1:151915600-151916800	Weak transcription	NHDF-Ad	bronchial
45	chr1:151915600-151916800	Weak transcription	NHLF	lung
46	chr1:151915600-151917000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:151915600-151918000	Enhancers	Stomach Smooth Muscle	stomach
48	chr1:151915600-151918400	Weak transcription	Ovary	ovary
49	chr1:151915600-151919400	Enhancers	Primary B cells from peripheral blood	blood
50	chr1:151915800-151916800	Weak transcription	Fetal Heart	heart

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