Variant report

Variant	rs74126732
Chromosome Location	chr1:151931645-151931646
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151925413..151928425-chr1:151930738..151934740,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13374107	1.00[EUR][1000 genomes]
rs13374906	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13375166	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13375962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16833656	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16833804	1.00[EUR][1000 genomes]
rs16833808	1.00[EUR][1000 genomes]
rs16833817	1.00[EUR][1000 genomes]
rs56179963	1.00[EUR][1000 genomes]
rs56365520	1.00[EUR][1000 genomes]
rs56399868	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59596794	1.00[EUR][1000 genomes]
rs60251684	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61697019	0.80[AFR][1000 genomes]
rs74126720	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74126729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126760	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126777	1.00[EUR][1000 genomes]
rs74126788	1.00[EUR][1000 genomes]
rs74126790	1.00[EUR][1000 genomes]
rs74126802	1.00[EUR][1000 genomes]
rs74129506	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547852	chr1:151843044-151955230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151928000-151933000	Weak transcription	Fetal Intestine Small	intestine
2	chr1:151930800-151940800	Weak transcription	NHDF-Ad	bronchial
3	chr1:151931200-151932000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:151931400-151931800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:151931400-151931800	Enhancers	Hela-S3	cervix
6	chr1:151931400-151932000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:151931600-151934000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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