Variant report

Variant	rs7540075
Chromosome Location	chr1:152094992-152094993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152092225..152095424-chr1:152096405..152099534,4	K562	blood:

Variant related genes	Relation type
ENSG00000233792	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11204924	0.81[AFR][1000 genomes]
rs12086674	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs16833807	0.83[ASN][1000 genomes]
rs16833809	0.81[ASN][1000 genomes]
rs16833811	0.91[ASN][1000 genomes]
rs16833817	0.91[ASN][1000 genomes]
rs16833852	0.85[AFR][1000 genomes]
rs2338311	1.00[ASN][1000 genomes]
rs3922963	0.92[AFR][1000 genomes]
rs4631697	0.92[AFR][1000 genomes]
rs4634912	0.82[YRI][hapmap];0.92[AFR][1000 genomes]
rs6658550	0.83[YRI][hapmap];0.96[AFR][1000 genomes]
rs6673322	0.89[AFR][1000 genomes]
rs6694472	0.92[AFR][1000 genomes]
rs72477383	1.00[ASN][1000 genomes]
rs72477384	1.00[ASN][1000 genomes]
rs72477385	1.00[ASN][1000 genomes]
rs72477387	0.81[ASN][1000 genomes]
rs72993686	0.83[ASN][1000 genomes]
rs72993689	0.91[ASN][1000 genomes]
rs72993691	0.81[ASN][1000 genomes]
rs7416722	1.00[ASN][1000 genomes]
rs7539086	0.85[AFR][1000 genomes]
rs7540580	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv872442	chr1:152054120-152187641	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152092400-152097200	Weak transcription	Spleen	Spleen

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