Variant report
| Variant | rs10495775 |
|---|---|
| Chromosome Location | chr2:30614883-30614884 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:30608816..30611428-chr2:30612958..30614942,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10514770 | 0.87[AFR][1000 genomes] |
| rs1252618 | 0.81[AFR][1000 genomes] |
| rs12993465 | 0.80[AFR][1000 genomes] |
| rs17009435 | 0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2030744 | 0.80[AFR][1000 genomes] |
| rs34019625 | 0.81[EUR][1000 genomes] |
| rs34547118 | 0.80[EUR][1000 genomes] |
| rs4519570 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6707509 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6756908 | 0.81[CEU][hapmap] |
| rs711238 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs711239 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs73925153 | 0.87[EUR][1000 genomes] |
| rs7608507 | 0.81[CEU][hapmap] |
| rs829609 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs829610 | 0.92[LWK][hapmap];0.86[YRI][hapmap] |
| rs829611 | 0.86[YRI][hapmap] |
| rs829612 | 0.92[LWK][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs829614 | 0.86[YRI][hapmap] |
| rs844193 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs864365 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533886 | chr2:30130019-31068764 | ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| 2 | nsv833648 | chr2:30505882-30696275 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv873769 | chr2:30585638-30625264 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:30614800-30615200 | Enhancers | Ovary | ovary |
